Pairwise Alignments

Query, 619 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 617 a.a., ABC transporter, transmembrane region:ABC transporter from Pseudomonas syringae pv. syringae B728a

 Score =  660 bits (1704), Expect = 0.0
 Identities = 342/617 (55%), Positives = 451/617 (73%), Gaps = 4/617 (0%)

Query: 1   MFKLFEGFTDPFPKGEPQRPPNTLWAFCRHYTRGFEKPLIVMALLSTAIAIIEVSLFGFM 60
           M + FE + DPFP  E   PP+ L  F    TRG    ++  ALL   ++I E  LF F+
Sbjct: 1   MLRAFEKWLDPFPPDEVPPPPDGLARFLWACTRGARGYILAFALLCAGVSIYEAWLFSFL 60

Query: 61  GQLVDWLST--SSPDTFLTENQSTLIGLGLLVLVGMPLLIAFYSLLIHQSLLGNYPMSIR 118
           GQ+V+ LST  +  DT   E+ S L G+GL++L  + +L+A  +++ HQ L  N P+ +R
Sbjct: 61  GQVVELLSTWKAGGDTAAQES-SVLWGIGLVLLSSI-VLVALRTMVQHQVLAINLPLRLR 118

Query: 119 WLAHRYLLKQSVSFYQDEFAGRISTKVMQTALAVRETVMKSLDVFVYVMVYFTAIVVILA 178
           W  HR +L+QS+SF+ DEF+GR++TKVMQTAL+VRE +   +++ + + VYF AI+ +  
Sbjct: 119 WDFHRLMLRQSLSFFSDEFSGRVTTKVMQTALSVREVLFTIVEIVLGIGVYFIAIIALAG 178

Query: 179 QADWRLMIPMLIWLAIYVTVQMYYVPKLKKVASEQADARSLMSGRIVDSYTNIMTVKLFS 238
             D +LM+P L WL ++    +Y+VP+L KV  EQA+ARS M+GR+ D+YTNI TVKLFS
Sbjct: 179 GFDLKLMLPFLGWLMLFGLAMLYFVPRLGKVGQEQANARSSMTGRVSDAYTNITTVKLFS 238

Query: 239 HSQRETQYAEEGMQDFLGTVHRQMRLVTGFNIWVEMANYLLVFTIAALSIYLWITSAISV 298
           HS+RE  +A   M+DF  T   QMRLV+ F I  +     L+ +    +++LW    +  
Sbjct: 239 HSKREAHFARAAMEDFKLTGLAQMRLVSQFEIVNQALVVALIMSAGGYALWLWHQGQVGT 298

Query: 299 GAIAVAVSLSLRINGMSKWIMWEVSALFENIGTVVDGMTMLGKPITVTDKPDAKPLVVKH 358
           GA+A   +++LRINGMS WIMW++++LFENIGTV DGM  L +   V D PDAK LV + 
Sbjct: 299 GAVAAITAMALRINGMSHWIMWQMTSLFENIGTVQDGMETLTRGPKVEDAPDAKALVTRG 358

Query: 359 GGITFDDVSFHYGENKGVINHLNLNIKPGEKVGLVGRSGAGKSTLVNLLLRFHDVESGRI 418
           G +TFD+VSF+Y   + V++ L+L+I+PGEK+GLVGRSGAGKSTL+NLLLRF+DV+ G I
Sbjct: 359 GAVTFDNVSFNYNGERQVLDALSLSIRPGEKIGLVGRSGAGKSTLINLLLRFYDVDKGSI 418

Query: 419 LIDGQPISEVTQESLRSKIGMVTQDTSLLHRSIRDNILYGNPNATEEQLLKATAQAHAHE 478
            IDGQ I+ VTQ+SLRS IGMVTQDTSLLHRSIRDNI YG P+AT+EQ+  A A A A  
Sbjct: 419 SIDGQDIAHVTQDSLRSAIGMVTQDTSLLHRSIRDNIAYGRPDATDEQIRSAAASAQADG 478

Query: 479 FILGLTDPHGNSGYDAQVGERGVKLSGGQRQRIAISRVLLKDAPLLVLDEATSALDSEVE 538
           FI  L+D  G+SGYD  VGERG+KLSGGQRQR+AI+RV+LK+AP+L+LDEATSALDSEVE
Sbjct: 479 FISQLSDKQGHSGYDTLVGERGIKLSGGQRQRVAIARVMLKNAPILLLDEATSALDSEVE 538

Query: 539 AAIQESLNELMQGKTVIAIAHRLSTIAAMDRLIVLDKGQIVEQGTHQELIAQNGIYAHLW 598
            AIQESL+E+MQGKTVIAIAHRLSTIAAMDRLIV+D G+I+EQGTH EL+ +NG YA LW
Sbjct: 539 VAIQESLDEMMQGKTVIAIAHRLSTIAAMDRLIVMDDGRIIEQGTHAELLGKNGTYARLW 598

Query: 599 AHQTGGFIGCDEDEVEE 615
            HQ+GGF+G D+   E+
Sbjct: 599 QHQSGGFLGEDQGVAED 615