Pairwise Alignments

Query, 619 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1000 a.a., cyclic nucleotide-binding domain (cNMP-BD) protein from Synechococcus elongatus PCC 7942

 Score =  240 bits (613), Expect = 2e-67
 Identities = 159/487 (32%), Positives = 262/487 (53%), Gaps = 24/487 (4%)

Query: 125 LLKQSVSFYQDEFAGRISTKVMQTALAVRETVMKSLDVFVYVMVYFTAIVVILAQADWRL 184
           LLK  + +++    G +S++V +    +R  +  +    V   ++    ++++    W L
Sbjct: 524 LLKLPLRYFERRPVGELSSRVQELE-KIRSFLTGTALTTVMDAMFSVIYILVMLVYSWFL 582

Query: 185 MIPMLIWLAIYVTVQMYYVPKLKKVASEQADARSLMSGRIVDSYTNIMTVKLFSHSQRET 244
            +  L  + I+V +  +  P +++   E+A+  +    ++V+  + I TVK  +   +  
Sbjct: 583 TLVALSTVPIFVAITFFASPVVRRQLREKAERNAETQSQLVEVLSGIQTVKAQNIELKAR 642

Query: 245 QYAEEGMQDFLGTVHRQMRLVTGFNIWVEMANYLLVFTIAALSIYLWITSAISVGAIAVA 304
              +E    ++    R +   T  +      N L    +  + +YL   + +S+G +   
Sbjct: 643 WQWQERYARYIAAGFRNINTSTAASSLTNFFNQLSGLLVLWVGVYLVFDNQLSLGQLIAF 702

Query: 305 VSLS-------LRINGMSKWIMWEVSAL-FENIGTVVDGMTMLGKPITVTDKPDAK-PLV 355
             +S       LR+  +  W  ++ +AL  E +  +VD       P    D    K P+ 
Sbjct: 703 RIISGYVTQPLLRLAQL--WQNFQETALSLERLADIVD------TPQESDDDDQGKIPMP 754

Query: 356 VKHGGITFDDVSFHYGENKGV-INHLNLNIKPGEKVGLVGRSGAGKSTLVNLLLRFHDVE 414
           + +G + F ++SF +GE   + ++++ L I  GE VG+VG+SG+GKSTL+ LL R +   
Sbjct: 755 MINGKVEFRNLSFRFGEQGPLQLSNVTLEIPAGEYVGIVGQSGSGKSTLMKLLPRLYSPL 814

Query: 415 SGRILIDGQPISEVTQESLRSKIGMVTQDTSLLHRSIRDNILYGNPNATEEQLLKATAQA 474
            G ILIDG  IS+V   SLR +IG+V QD+ L   ++ +NI    PNAT ++++ A   A
Sbjct: 815 EGEILIDGYDISKVELYSLRRQIGIVPQDSLLFQGTVEENISLTKPNATTDEIITAAKAA 874

Query: 475 HAHEFILGLTDPHGNSGYDAQVGERGVKLSGGQRQRIAISRVLLKDAPLLVLDEATSALD 534
            AH+FI+ L       GY+ +VGERG  LSGGQRQRIAI+R +L++  LL+LDEATSALD
Sbjct: 875 GAHDFIMTLP-----LGYNTRVGERGGALSGGQRQRIAIARTVLQNPQLLILDEATSALD 929

Query: 535 SEVEAAIQESLNELMQGKTVIAIAHRLSTIAAMDRLIVLDKGQIVEQGTHQELIAQNGIY 594
            + E  +  +L +  +GKTV  I HRLST+   DR+IV+DKG +VEQG+H EL+   G Y
Sbjct: 930 YDTERQVSINLQQHFRGKTVFFITHRLSTVRHADRIIVMDKGAMVEQGSHDELMELRGRY 989

Query: 595 AHLWAHQ 601
             L+  Q
Sbjct: 990 FCLYRQQ 996