Pairwise Alignments

Query, 619 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 617 a.a., ABC transporter, transmembrane region (NCBI) from Rhodospirillum rubrum S1H

 Score =  265 bits (676), Expect = 6e-75
 Identities = 189/579 (32%), Positives = 306/579 (52%), Gaps = 51/579 (8%)

Query: 44  LLSTAIAIIEVSLFGFMGQLVDWLSTSSPDTFLTENQSTLIGLGLLVLVGMPLL--IAF- 100
           LL   +A + V LF      VD LS       + E  + ++ LG++   G+  L  +AF 
Sbjct: 49  LLLAKLAGVVVPLF--YKHAVDALS-------VPERAAIVLPLGVIAAYGLARLGNLAFT 99

Query: 101 ------YSLLIHQSLLGNYPMSIRWLAHRYLLKQSVSFYQDEFAGRISTKVMQTALAVRE 154
                 ++ +I +++   + +S+R   H + L  S+ F+ D   G +S +V++      E
Sbjct: 100 EIRDLLFARVIERAI---HVLSLRTFRHLHGL--SLRFHLDRQTGGLS-RVIERGTRAIE 153

Query: 155 TVMKSLDVFVYVMVYFTAIV--VILAQADWRLMIPMLIWLAIYVT----VQMYYVPKLKK 208
            V++   +     +    +V  V+    DW   + M+  LA+YV     +  + +   + 
Sbjct: 154 VVLRQFVLRAGPSLIELVMVCGVLWTLYDWTYAVVMVGALAVYVAWTLAITEWRLDFRRS 213

Query: 209 VASEQADARSLMSGRIVDSYTNIMTVKLFSHSQRETQYAEEGMQDFLGTV---HRQMRLV 265
           + +  A+A    S + +DS  N  TVK F + + E +  +  +  +       HR + L+
Sbjct: 214 MNTHDAEA----SSKAIDSLINYETVKYFGNEEHEAKRFDRALSAYEEVAVKSHRSLSLL 269

Query: 266 TGFNIWVEMANYLLVFTIAALSIY---LWITSAISVGAIAVAVSLSLRINGMSKWIMWEV 322
                 +   + + V  +AA+ I    +     + V    + + + L   GM   +  EV
Sbjct: 270 NVGQSAIISLSLVAVMIMAAVDIRGGRMTPGDFVLVNTYLLQLYVPLNFLGM---VYREV 326

Query: 323 SALFENIGTVVDGMTMLGKPITVTDKPDAKPLVVKHGGITFDDVSFHYGENKGVINHLNL 382
                ++  +     ++ +P  V D  +A  LVV+ G + F+ V F Y   + V+  ++L
Sbjct: 327 KQGLVDMEVLFG---LIDRPPEVADPANAADLVVRGGAVRFEGVRFAYNPEREVLKGVSL 383

Query: 383 NIKPGEKVGLVGRSGAGKSTLVNLLLRFHDVESGRILIDGQPISEVTQESLRSKIGMVTQ 442
            I  G  + +VG SGAGKSTL  LL RF+DV  GR+LIDGQ + +VTQ SLR  IG+V Q
Sbjct: 384 EIPAGGTLAVVGHSGAGKSTLSRLLFRFYDVTGGRVLIDGQDLRDVTQASLRRAIGIVPQ 443

Query: 443 DTSLLHRSIRDNILYGNPNATEEQLLKATAQAHAHEFILGLTDPHGNSGYDAQVGERGVK 502
           DT L + +I  NI YG P A+ +++ +A   A  H+F+  L      +GYD QVGERG+K
Sbjct: 444 DTVLFNDTIGYNIAYGRPGASRQEVERAARLAAIHDFVQSL-----KNGYDTQVGERGLK 498

Query: 503 LSGGQRQRIAISRVLLKDAPLLVLDEATSALDSEVEAAIQESLNELMQGKTVIAIAHRLS 562
           LSGG++QR+AI+R +LKD  +L+LDEATSALDS  E  IQ +L ++ +G+T + IAHRLS
Sbjct: 499 LSGGEKQRVAIARTILKDPAILILDEATSALDSHTEREIQGALRDVSRGRTTLVIAHRLS 558

Query: 563 TIAAMDRLIVLDKGQIVEQGTHQELIAQNGIYAHLWAHQ 601
           T+   DR++VLD G++ E G+H +L+   G+YA LW  Q
Sbjct: 559 TVIDADRILVLDGGRVAESGSHDDLLRAEGLYAALWRKQ 597