Pairwise Alignments

Query, 619 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 601 a.a., ABC transporter, ATP-binding protein MsbA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  245 bits (625), Expect = 5e-69
 Identities = 189/615 (30%), Positives = 311/615 (50%), Gaps = 50/615 (8%)

Query: 20  PPNTLWAFCRHYTRGFEKPLIVMALLSTA----IAIIEVSLFGFMGQLVD-WLSTSSP-- 72
           P N +W   +    G+ KP+  M LLS        +++ +   F+G  +D   S+S+P  
Sbjct: 5   PKNEMWTVFKRLM-GYLKPMKGMFLLSVVGLIVYGLVDAAFISFIGPFIDKGFSSSAPAI 63

Query: 73  ---------DTFLTENQSTLIGLGLLVLV----GMPLLIAFYSLLIHQSLLGNYPMSIRW 119
                      F  +NQ  L+   +++L+    G    ++ Y +    + L    M +R 
Sbjct: 64  SNGIALPTSQGFHADNQVLLMAPIVVILMFSLRGFANFVSTYGISYMSARL---IMDMRQ 120

Query: 120 LAHRYLLKQSVSFYQDEFAGRISTKVMQTALAVRETVMKSLDVFVYVMVYFTAIVVILAQ 179
               + L   VS+   E  G + +KV      +      +L   V   V    ++ ++  
Sbjct: 121 QVFEHYLSLPVSYMDKENTGNLISKVTFDTEQIARASGSALISIVRDSVTIIGMLGLMFY 180

Query: 180 ADWRLMIPMLIWLAIYVTVQMYYVPKLKKVASEQADARSLMSGRIVDSYTNIMTVKLFSH 239
             W+L + +L+   I   V      + +KV+ +   A   +S            V  F  
Sbjct: 181 NSWKLSLCILVIGPIMGVVITIVSRRFRKVSKQIQTAMGDVSAATEQMIKGHKNVLAFGG 240

Query: 240 SQRET-QYAEEGMQDFLGTVHRQMRLVTGFNIWVEMANYLLVFTIAALSIYLWITSAISV 298
            + ET ++A+   ++     H+ M+L     +   +   ++V    AL+  L+  S  S+
Sbjct: 241 QETETARFAKINDRNR----HQNMKLAVAQAVSQPL---IMVIGSFALAFVLYAASLDSM 293

Query: 299 GAIAVAVSLSLRINGMSKWI-----MWEVSALFENIGTVVDGMTMLGKPITVTDKPDAKP 353
            A   A + +  +  M   +     +  V+A F+     +   T + + +    + D   
Sbjct: 294 KADLTAGTFATILGAMMAMLQPIKNLTRVNAEFQR---GIAACTTVFELLDTVPESDTGT 350

Query: 354 LVVKH--GGITFDDVSFHY-GENKGVINHLNLNIKPGEKVGLVGRSGAGKSTLVNLLLRF 410
             V    G + FD+VSF Y G+ +  +  ++  +  G+ + LVGRSG+GKST+ +L+ RF
Sbjct: 351 YTVARAKGNLRFDNVSFSYEGQERRALEKIDFEVSQGQTLALVGRSGSGKSTIASLVTRF 410

Query: 411 HD-VESGRILIDGQPISEVTQESLRSKIGMVTQDTSLLHRSIRDNILYGNPN-ATEEQLL 468
           +  +ESG IL+D   I + + +SLRS++ +V+Q  +L + +I +NI Y  P   T EQ++
Sbjct: 411 YTGLESGDILLDDVSIYDYSLKSLRSQVALVSQQVTLFNDTIANNIAYAYPGEVTREQII 470

Query: 469 KATAQAHAHEFILGLTDPHGNSGYDAQVGERGVKLSGGQRQRIAISRVLLKDAPLLVLDE 528
           +A   AHA EFI  L D     G D QVGE GV LSGGQRQRIAI+R +L+DAP+L+LDE
Sbjct: 471 EAATLAHAMEFIEQLPD-----GLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDE 525

Query: 529 ATSALDSEVEAAIQESLNELMQGKTVIAIAHRLSTIAAMDRLIVLDKGQIVEQGTHQELI 588
           ATSALD+E E AIQ+ L+ L Q +T + IAHRLSTI + D+++V+D+G+IVE+GTH+ L+
Sbjct: 526 ATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLL 585

Query: 589 AQNGIYAHLWAHQTG 603
              G+YA L+  Q G
Sbjct: 586 ELGGMYAKLYQMQFG 600