Pairwise Alignments

Query, 308 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  185 bits (469), Expect = 1e-51
 Identities = 115/309 (37%), Positives = 175/309 (56%), Gaps = 13/309 (4%)

Query: 1   MDKFADMVLFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTE 60
           MD +A++ LF S+V+    + A R L ++ + V+ R+ ALE   GVKL+ R+TR L LT+
Sbjct: 1   MDIYANIPLFVSVVELGSFSEAARRLGINKSAVSKRISALEQALGVKLIQRTTRRLHLTD 60

Query: 61  SGVLYHQACLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPE 120
           +G  Y++   +    +++ ++ L +    V+G+LKVS P   G++HIAP+L+ F+ QYP 
Sbjct: 61  AGRQYYEYVHQAAALMQQAQDALASQQGAVQGSLKVSLPNVFGQRHIAPLLSEFSRQYPT 120

Query: 121 VVPYLYLNDNISNLAESGLDVVIRYGELADSSLISRKLATSRRVLCASPAYLARKGIPKT 180
           +   + L+D + +L + GLD+V+R G+L DSSL++ KLA    +LCASP YLA +  P++
Sbjct: 121 INLEVSLDDRVVDLLKEGLDMVVRIGDLPDSSLVAVKLAPCHSLLCASPDYLAHQSHPRS 180

Query: 181 PQDLAQHDCL--AMVRSNEEMKTWHFQENEQHKVITVVPKSFADDGEVIRQWALAGMGIA 238
             DL  H+CL  +  R   E   W F+   +   I        ++ EVIR+  L GMGIA
Sbjct: 181 LADLRGHNCLFYSYFRGGLE---WSFERRGEVSRIKPRGNIKVNNSEVIRRLLLDGMGIA 237

Query: 239 LKSILDVQDDLNQQRLVTVLDGYMKNFNASTSASGADLNVLYLSRQYQPKRLRLFIDFLI 298
           L     V+++L    LV VL  Y         A    +  L   RQ+ P RLR+FIDFL 
Sbjct: 238 LMPRYLVEEELAAGTLVPVLSDY--------QAPTHGIYALTPERQHMPARLRVFIDFLK 289

Query: 299 EQCAFRLGN 307
           +  A R  N
Sbjct: 290 QALAERGAN 298