Pairwise Alignments

Query, 308 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 305 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  187 bits (474), Expect = 3e-52
 Identities = 106/296 (35%), Positives = 158/296 (53%), Gaps = 8/296 (2%)

Query: 6   DMVLFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTESGVLY 65
           D+ L   I     ++AA REL ++PA+ +A LQ LE +   +L  RSTR++ LTE G  +
Sbjct: 6   DLQLAIRIADLHSISAAARELGMTPASASAALQRLEHKLNCQLFARSTRNMQLTEEGQAF 65

Query: 66  HQACLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPEVVPYL 125
                + L+ ++   + L     E+RG L+++ P D+G+  +   L   T + PE+   L
Sbjct: 66  IDTGRQALSLLQGASDALADKRGELRGELRIALPSDLGRNRVRAWLDELTAEAPELTLRL 125

Query: 126 YLNDNISNLAESGLDVVIRYGELADSSLISRKLATSRRVLCASPAYLARKGIPKTPQDLA 185
           Y  D + +L    + + +RYGEL DSSL+ R+LA   RV  ASP YLAR G P  PQ L+
Sbjct: 126 YFGDQLDDLIAQNVHLALRYGELQDSSLMRRQLARMHRVTVASPVYLARHGRPSHPQQLS 185

Query: 186 QHDCLAMVRSNEEMKTWHFQENEQHKVITVVPKSFADDGEVIRQWALAGMGIALKSILDV 245
           QH  L + R N     W F   +Q   + +      +DG VI++WALAG GIA KS  DV
Sbjct: 186 QHKILLLNRGNTPWHKWRFAYKQQPLEVELTGSKSCNDGAVIKEWALAGEGIAYKSWFDV 245

Query: 246 QDDLNQQRLVTVLDGYMKNFNASTSASGADLNVLYLSRQYQPKRLRLFIDFLIEQC 301
             ++ + RL  +L  Y+        A    L + YL  +Y   ++R  I+FL E+C
Sbjct: 246 AQEVTEGRLELLLVDYL--------ADPIPLQLTYLQTEYPSHKVRTCIEFLKEKC 293