Pairwise Alignments

Query, 308 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 307 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  171 bits (434), Expect = 2e-47
 Identities = 103/299 (34%), Positives = 153/299 (51%), Gaps = 8/299 (2%)

Query: 6   DMVLFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTESGVLY 65
           D++LF  +     L+ A  EL +S A  +A L+ LE      L  RSTR L LT++G  Y
Sbjct: 5   DLLLFVRVADCGSLSGAAVELEISAAVASASLKRLEKELDTVLFIRSTRSLRLTDAGERY 64

Query: 66  HQACLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPEVVPYL 125
              C   L  +R  E  L     ++ G L V+ P D G+ +I P L    ++YP +   L
Sbjct: 65  LSYCRRALEDLRLGEQALACAKSQIAGKLSVALPSDAGRNYILPWLDHLMDEYPRLQLRL 124

Query: 126 YLNDNISNLAESGLDVVIRYGELADSSLISRKLATSRRVLCASPAYLARKGIPKTPQDLA 185
           +L D+++N     +DV +R G   DSSL++ K+ +++R+LCASP Y+A  G P+T  DL 
Sbjct: 125 HLADSLTNFYHDKIDVALRSGTPKDSSLVAFKICSAQRILCASPEYIAVHGRPETLSDLE 184

Query: 186 QHDCLAMVRSNEEMKTWHFQENEQHKVITVVPKSFADDGEVIRQWALAGMGIALKSILDV 245
           +H+CL  +   +    W F  + Q   + V      +D EV R+WALAG GI  KS LD+
Sbjct: 185 KHNCLFFMLDEKTHDQWCFYRDGQSHRVRVSGNRTCNDAEVARKWALAGKGIVYKSSLDL 244

Query: 246 QDDLNQQRLVTVLDGYMKNFNASTSASGADLNVLYLSRQYQPKRLRLFIDFLIEQCAFR 304
            DDL    LV +L  Y        S   ADL ++   RQ+    +    + L ++C  R
Sbjct: 245 ADDLASGALVPLLTQY--------SGESADLYLVCPGRQHVTPLVLTLREHLRQRCQQR 295