Pairwise Alignments

Query, 308 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  181 bits (460), Expect = 1e-50
 Identities = 109/295 (36%), Positives = 160/295 (54%), Gaps = 8/295 (2%)

Query: 6   DMVLFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTESGVLY 65
           D+ L   I   + L+AA +E+ ++PA  +A LQ LE + G +L  RSTR L LTE G ++
Sbjct: 6   DLQLALRIAALESLSAASKEVGMTPAAASAALQRLEKKLGCQLFARSTRRLQLTEEGRIF 65

Query: 66  HQACLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPEVVPYL 125
             A    L  +      L     E++G ++++ P DIG+  I   L    +  PE+   L
Sbjct: 66  LDAAKPALALLETASANLAEHRGELKGEVRLALPSDIGRSRIRYWLDELMDSAPELSIQL 125

Query: 126 YLNDNISNLAESGLDVVIRYGELADSSLISRKLATSRRVLCASPAYLARKGIPKTPQDLA 185
           Y  D++++L +  + + +RYG+L DS+L  R+L+ + RVL ASPAYLA+ G P T  +L+
Sbjct: 126 YFGDHMTDLIDQNIHLALRYGQLEDSNLKRRQLSMTPRVLVASPAYLAQYGEPLTLNELS 185

Query: 186 QHDCLAMVRSNEEMKTWHFQENEQHKVITVVPKSFADDGEVIRQWALAGMGIALKSILDV 245
           QH  L + R  E  + W F  N +   I V  K F +DG VIR WAL G GIA KS LDV
Sbjct: 186 QHSVLILNRGGEPWQKWKFSHNGEAVEIEVRGKRFCNDGAVIRDWALDGRGIAYKSWLDV 245

Query: 246 QDDLNQQRLVTVLDGYMKNFNASTSASGADLNVLYLSRQYQPKRLRLFIDFLIEQ 300
             D+ + RL  VL        A   A    L ++YL   Y   ++R  I+FL ++
Sbjct: 246 AQDVTEGRLKLVL--------ADKIAPPIPLQLVYLQTDYPSHKIRRTIEFLAQK 292