Pairwise Alignments

Query, 308 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  171 bits (432), Expect = 2e-47
 Identities = 96/298 (32%), Positives = 164/298 (55%), Gaps = 9/298 (3%)

Query: 1   MDKFADMVLFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTE 60
           M+ F+ + +F ++V+    + AG++L LS + ++ R+  LE   G++LL R+TR LSLT+
Sbjct: 1   MEHFSALPIFVTVVECGSFSLAGQKLGLSKSAISKRISQLEQHLGIQLLQRTTRSLSLTD 60

Query: 61  SGVLYHQACLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPE 120
           +G  Y +     +   +E  + +    +  RG L++S P   G+ +IAP++A F ++YP+
Sbjct: 61  AGARYFEYIRPAVQLTQEGLDAISELQQTPRGNLRISVPMVFGRLYIAPLIAEFLKRYPD 120

Query: 121 VVPYLYLNDNISNLAESGLDVVIRYGELADSSLISRKLATSRRVLCASPAYLARKGIPKT 180
           +   + ++D I++L   G D+ IR GEL DSSLI+RK+A    V+CASPAYL + G+P T
Sbjct: 121 IQLQMQMDDKITDLIAGGFDLAIRIGELPDSSLIARKIAPCLSVICASPAYLTQHGLPMT 180

Query: 181 PQDLAQHDCLAMVRSNEEMKTWHFQENEQHKVITVVPKSFADDGEVIRQWALAGMGIALK 240
           P +L QH+CL      + ++ W F   +  + +        ++ + I Q  L G+GIA  
Sbjct: 181 PCELTQHNCLFYSYFQDGVE-WSFHSPDGMQRVQPKGNYQVNNSDAINQACLDGLGIANL 239

Query: 241 SILDVQDDLNQQRLVTVLDGYMKNFNASTSASGADLNVLYLSRQYQPKRLRLFIDFLI 298
               V+ DL    L  +L  Y              +  +Y  R+YQP ++ + I+FL+
Sbjct: 240 PRFIVEPDLQTGHLQALLTDY--------PLPEHGIYAVYPQRKYQPTKVTVLIEFLM 289