Pairwise Alignments

Query, 308 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  172 bits (436), Expect = 9e-48
 Identities = 102/304 (33%), Positives = 169/304 (55%), Gaps = 13/304 (4%)

Query: 1   MDKFADMVLFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTE 60
           M+ F+ + +F ++V+    +AAG++L LS + ++ R+  LE   G++LL R+TR LSLT+
Sbjct: 1   MEHFSALPIFVTVVECGSFSAAGQKLGLSKSAISKRITQLEQHLGIQLLQRTTRSLSLTD 60

Query: 61  SGVLYHQACLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPE 120
           +G  Y +     +   +E  + +    +  +G L++S P   G+ +IAP++A F ++YP+
Sbjct: 61  AGARYFEYIRPAVQLTQEGLDAISELQQTPKGNLRISVPMVFGRLYIAPLIAEFLKRYPD 120

Query: 121 VVPYLYLNDNISNLAESGLDVVIRYGELADSSLISRKLATSRRVLCASPAYLARKGIPKT 180
           +   + ++D  ++L   G D+ IR GEL DSSLI+RK+A    V+CASPAYLA+ G P T
Sbjct: 121 IQLQMQMDDKTTDLIAGGFDLAIRIGELPDSSLIARKIAPCLSVICASPAYLAQHGSPMT 180

Query: 181 PQDLAQHDCLAMVRSNEEMKTWHFQENEQHKVITVVPKS--FADDGEVIRQWALAGMGIA 238
           P  L QH+CL      + ++ W F  +  + V  V PK     ++ + I Q  L G+GIA
Sbjct: 181 PSGLTQHNCLFYSYFQDGVE-WSF--HSPYGVQRVQPKGNYQVNNSDAIHQACLDGLGIA 237

Query: 239 LKSILDVQDDLNQQRLVTVLDGYMKNFNASTSASGADLNVLYLSRQYQPKRLRLFIDFLI 298
                 V+ DL   RL T+L  +              +  +Y  R+Y P ++ + I FL+
Sbjct: 238 NLPRFIVESDLQAGRLQTILTDF--------PLPEHGIYAVYPQRKYLPTKVTVLIGFLM 289

Query: 299 EQCA 302
           E+ A
Sbjct: 290 EKLA 293