Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., ATP-dependent RNA helicase PA3950 from Pseudomonas fluorescens FW300-N2E2

 Score =  290 bits (743), Expect = 5e-83
 Identities = 164/395 (41%), Positives = 243/395 (61%), Gaps = 12/395 (3%)

Query: 23  MSFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           M+F++L L   L++AL       P+ +Q   +PA+L G+D+ A A TG+GKT  + +PLL
Sbjct: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAMPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60

Query: 82  ERLKTSPEQ------QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNA 135
           + L T   +      +AL+LVPTRELA QV E +      L L+T  + GGV    Q   
Sbjct: 61  QLLTTEGPKVAANSVRALILVPTRELAEQVHESVRQYAQNLPLSTYAVYGGVSINPQMMK 120

Query: 136 LAENPNILVATTGRLFDL-TQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVR 194
           L +  ++LVAT GRL DL  Q+ L+ N++ TLVLDEADR+LD+GF  ++  +       R
Sbjct: 121 LRKGVDLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYKALPKKR 180

Query: 195 QTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLK 254
           QT++ SATFSD ++L A Q++  P  +  +P N     V++ +  V+K  K +  V L++
Sbjct: 181 QTLLFSATFSDAIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTVDKKRKPELFVHLMR 240

Query: 255 QHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIA 314
           +H+W QVLVF   +   D+L +KL   G+ A  +HGDK Q+ R+ AL  FK G  Q+L+A
Sbjct: 241 KHKWKQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKAGEVQILVA 300

Query: 315 TDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATR 374
           TD+ ARG+ IE LP+V+NF+LP+ AE Y+HR+GRT RAG  G A+SLVC  E++ L+A  
Sbjct: 301 TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGQAISLVCADEVNLLSAIE 360

Query: 375 TLTQRELPVQNLEGFP----VTDQPSTGESKRAPR 405
            LT++ LP Q  + F     V D  ++G+  + P+
Sbjct: 361 MLTRQTLPRQMEQDFEPEHRVPDTDASGQVIKKPK 395