Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

 Score =  266 bits (681), Expect = 1e-75
 Identities = 162/408 (39%), Positives = 235/408 (57%), Gaps = 19/408 (4%)

Query: 23  MSFSSLALSADLIQALPKA-ITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           MSF+SL LS  L+ A+  A  T+P+ +Q   IPA+L G+D+   A TG+GKT  + LP+L
Sbjct: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 82  ERL----------KTSPEQ-QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKT 130
           ERL          +  P Q + LVL PTRELA QV E        L   + C+ GGV   
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120

Query: 131 EQQNALAENPNILVATTGRLFDLT-QSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQ 189
            Q  A++   ++LVA  GRL DL  Q  + L+ V  LVLDEADR+LDMGF   V+ + ++
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 190 TAGVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQAL 249
               RQ ++ SATFS D+   A +L+  P ++   P N+  + +++ ++ +    K   L
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240

Query: 250 VALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTT 309
             L+    W QVLVF   K  A+ L + L+K G+ A  +HG+KSQ+ R  ALA+FK G  
Sbjct: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300

Query: 310 QVLIATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDA 369
           ++L+ATD+ ARG+ I+ LP V+NFELP   E YVHR+GRT RAG+ G A+SLV   E   
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 370 LNATRTLTQRELPVQNLEGFPVT----DQPSTGE--SKRAPRDKQANR 411
           L +   +T++++   +L GF  +    ++P   E    R PR+ +  R
Sbjct: 361 LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPR 408