Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 619 a.a., DEAD/DEAH box helicase from Pseudomonas fluorescens FW300-N2E3

 Score =  269 bits (687), Expect = 2e-76
 Identities = 161/408 (39%), Positives = 235/408 (57%), Gaps = 16/408 (3%)

Query: 23  MSFSSLALSADLIQALPKA-ITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           MSF+SL LS  L++A+  A  T+P+ +Q   IPA+L G+D+   A TG+GKT  + LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 82  ERL----------KTSPEQ-QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKT 130
           ERL          +  P Q + LVL PTRELA QV E        L   + C+ GGV   
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120

Query: 131 EQQNALAENPNILVATTGRLFDLT-QSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQ 189
            Q  A++   ++LVA  GRL DL  Q  + L+ V  LVLDEADR+LDMGF   V+ + ++
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 190 TAGVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQAL 249
               RQ ++ SATFS D+   A +L+  P ++   P N+  + +++ ++ +    K   L
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRSLL 240

Query: 250 VALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTT 309
             L+    W QVLVF   K  A+ L + L+K G+ A  +HG+KSQ+ R  ALA+FK G  
Sbjct: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEV 300

Query: 310 QVLIATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDA 369
           ++L+ATD+ ARG+ I+ LP V+NFELP   E YVHR+GRT RAG+ G A+SLV   E   
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 370 LNATRTLTQRELPVQNLEGFPVTDQPSTGESKRAPRDKQANRRTQNKK 417
           L +   +T++++   +L GF   D  +    K   R++   R  +N +
Sbjct: 361 LKSIERMTKQKIADGDLMGF---DSSAVEAEKPEVRERPDVRNPRNPR 405