Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., ATP-dependent RNA helicase PA3950 from Pseudomonas fluorescens FW300-N1B4

 Score =  286 bits (733), Expect = 7e-82
 Identities = 167/412 (40%), Positives = 247/412 (59%), Gaps = 9/412 (2%)

Query: 23  MSFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           M+F++L L   L++AL       P+ +QT  IPA+L G+D+ A A TG+GKT  + LPLL
Sbjct: 1   MTFATLGLIEPLLRALETLGYQTPTPVQTQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 82  ERLK------TSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNA 135
           + L       ++   +AL+LVPTRELA QV E +      L L+T  + GGV    Q   
Sbjct: 61  QLLAMEGPKVSANSVRALILVPTRELAEQVHEAVRQYAENLPLSTYAVYGGVSINPQMMK 120

Query: 136 LAENPNILVATTGRLFDL-TQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVR 194
           L +  ++LVAT GRL DL  Q+ L+ N++ TLVLDEADR+LD+GF  ++  +       R
Sbjct: 121 LRKGVDLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELGNIYRVLPKKR 180

Query: 195 QTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLK 254
           QT++ SATFSD ++L A Q++  P  +  +P N     V++ +  V+K  K +  + L++
Sbjct: 181 QTLLFSATFSDAIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTVDKKRKPELFIHLMR 240

Query: 255 QHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIA 314
           + +W QVLVF   +   D+L +KL   GI A  +HGDK Q+ R+ AL  FK    Q+L+A
Sbjct: 241 KGKWKQVLVFAKTRNGVDALVEKLQGLGINADGIHGDKPQATRQRALDRFKASEVQILVA 300

Query: 315 TDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATR 374
           TD+ ARG+ IE LP+V+NF+LP+ AE Y+HR+GRT RAG  G A+SLVC  E++ L+A  
Sbjct: 301 TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGQAISLVCADEVNLLSAIE 360

Query: 375 TLTQRELPVQNLEGF-PVTDQPSTGESKRAPRDKQANRRTQNKKSVKQFQGK 425
           TLT++ L  Q  + F P    P T  S +  +  +  ++ +     K+  GK
Sbjct: 361 TLTRQTLTRQMEQDFEPEHRVPDTDASGQVVKKPKKPKKPKTSSGGKRNLGK 412