Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  231 bits (588), Expect = 5e-65
 Identities = 153/373 (41%), Positives = 210/373 (56%), Gaps = 13/373 (3%)

Query: 24  SFSSLALSADLI---QALPKAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPL 80
           +FSSL LSA ++    AL  A   P  IQ   +P ML G D+ A A TGSGKT A+G+ L
Sbjct: 5   AFSSLPLSAAMLANLDALGYAAMTP--IQAQSLPVMLKGHDLIAQAKTGSGKTAAFGIAL 62

Query: 81  LERLKTSPEQ---QALVLVPTRELAMQVSEVLTHVGTAL-GLNTLCLCGGVDKTEQQNAL 136
           LE L  +P     QALVL PTRELA QV++ L  +  A   +  L LCGGV    Q  +L
Sbjct: 63  LEPL--NPRYFGCQALVLCPTRELADQVAKELRRLARAADNIKILTLCGGVSIGPQIASL 120

Query: 137 AENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQ 195
               +++V T GR+ +  + G L+L+ + TLVLDEADR+LDMGF+  +  +  QT   RQ
Sbjct: 121 EHGAHVIVGTPGRVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAEIIGQTPARRQ 180

Query: 196 TVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQ 255
           T++ SAT+   +K  +   MR P QV A   +   Q +++  Y ++   + +A+  LL  
Sbjct: 181 TLLFSATYPAGIKQLSASFMRDPQQVRAEALHDDAQ-IEQRFYEIDPEQRMEAVTRLLAS 239

Query: 256 HQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIAT 315
            +    + F   K+    L   L+  GI A  L+GD  Q +R+  LA F N +  VL+AT
Sbjct: 240 FRPESCVAFCFTKQQCQELVDHLSANGISAMALNGDLEQRDRDQVLAMFANRSLSVLVAT 299

Query: 316 DLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATRT 375
           D+ ARG+ I+ L +VIN EL   AE +VHRVGRT RAG  G+A+SLV   E     A   
Sbjct: 300 DVAARGLDIDALDMVINVELARDAEIHVHRVGRTGRAGNQGLAVSLVAPAEAHRAQAIEK 359

Query: 376 LTQRELPVQNLEG 388
           L Q  L  Q L+G
Sbjct: 360 LQQAPLNWQPLDG 372