Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 605 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  280 bits (717), Expect = 7e-80
 Identities = 173/433 (39%), Positives = 244/433 (56%), Gaps = 28/433 (6%)

Query: 23  MSFSSLALSADLIQALPKA-ITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           MSF+SL LS  L  A+  A  T+P+ +Q   IPA+L G+D+   A TG+GKT  + LP+L
Sbjct: 1   MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 82  ERL----------KTSPEQ-QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKT 130
           E L          +  P+Q + LVL PTRELA QV E        L L + C+ GGV   
Sbjct: 61  ELLFPGGHPDREHRYGPKQPRVLVLTPTRELAAQVHESFKVYARDLPLKSTCIFGGVGMN 120

Query: 131 EQQNALAENPNILVATTGRLFDLT-QSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQ 189
            Q  A+A+  ++LVA  GRL DL  Q  + L+ V  LVLDEADR+LDMGF   V+ + ++
Sbjct: 121 PQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 190 TAGVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQAL 249
               RQ ++ SATFS D+   A +L+  P ++   P N+  + +++ ++ V    K   L
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRMFRVAASHKRALL 240

Query: 250 VALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTT 309
             L+ Q  W QVLVF   K  A+ L + L K G+ A  +HG+KSQ+ R  ALA+FK    
Sbjct: 241 AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQV 300

Query: 310 QVLIATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDA 369
           ++L+ATD+ ARG+ I+ LP V+NFELP   E YVHR+GRT RAG+ G A+SLV   E   
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 370 LNATRTLTQRELPVQNLEGF--------------PVTDQPSTGESK-RAPRDKQANRRTQ 414
           L     +T++ +P  +L GF              P   +P  GE K R  R+K A +  +
Sbjct: 361 LKGIERMTKQRIPEGDLMGFDASAIEAEKPEVREPRQPRPQRGEGKARGERNKPAEKGAE 420

Query: 415 NKKSVKQFQGKSR 427
            K+  ++ Q KSR
Sbjct: 421 QKERNRRSQSKSR 433