Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., ATP-dependent RNA helicase RhlE from Xanthomonas campestris pv. campestris strain 8004

 Score =  269 bits (688), Expect = 1e-76
 Identities = 164/409 (40%), Positives = 237/409 (57%), Gaps = 20/409 (4%)

Query: 23  MSFSSLALSADLIQALPKAITE-PSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           MSF SL L+  L++AL +   E P+AIQ   IP +L G D+ A A TG+GKT A+GLPLL
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 82  ERLKTSPEQ-------QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQN 134
           + L T+P+        +AL+L PTRELA QV + L      L + +  + GGV    Q +
Sbjct: 61  QHLGTTPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 135 ALAENPNILVATTGRLFD-LTQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGV 193
           AL    ++L+A  GRL D + +  + L+ +  L+LDEADR+LDMGF P ++ + ++    
Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 194 -RQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVAL 252
            RQT++ SATF +++K  A + MR P Q+   P N++ +++   ++ V+   K   L+ L
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL 240

Query: 253 LKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVL 312
           L Q    Q LVF   K  +D L   L K+GI    +HG+KSQ +R  AL++FK G   VL
Sbjct: 241 LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL 300

Query: 313 IATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNA 372
           +ATD+ ARGI I+ LP VIN++LPM AE YVHR+GRT R G  G A+SLV   E   L  
Sbjct: 301 VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ 360

Query: 373 TRTLTQRELPVQNLEGF----PV---TDQPSTGE---SKRAPRDKQANR 411
              +  R++ ++++ G+    P+      P   E     RAPR   A R
Sbjct: 361 IVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQPGGDRAPRKSHARR 409