Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., DEAD-box ATP dependent DNA helicase (RefSeq) from Shewanella amazonensis SB2B

 Score =  288 bits (738), Expect = 2e-82
 Identities = 176/414 (42%), Positives = 243/414 (58%), Gaps = 9/414 (2%)

Query: 23  MSFSSLALSADLIQALP-KAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           MSF+SL LSA +++AL  K    PS IQ   IP +L G+D+ A A TG+GKT  + LPLL
Sbjct: 1   MSFASLGLSAPILKALDHKGYKTPSPIQAQAIPVVLEGRDLLAAAQTGTGKTAGFTLPLL 60

Query: 82  ERL----KTSPEQ-QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNAL 136
           E L    K  P+Q +AL+L PTRELA Q+++ +T     L L +  + GGV    Q   L
Sbjct: 61  ELLSQTQKAGPKQVRALILTPTRELAAQIADNITAYSKYLPLKSTVVFGGVGIGPQITTL 120

Query: 137 AENPNILVATTGRLFDL-TQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQ 195
               +ILVAT GRL DL  Q+ +  + +  LVLDEADR+LDMGF   ++ +       RQ
Sbjct: 121 RRGIDILVATPGRLLDLHQQNAVSFHGLEILVLDEADRMLDMGFIHDIKRILKLLPAKRQ 180

Query: 196 TVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQ 255
            ++ SATFS +++  A  L+    +VS  P NS  ++V++ +  V+K  K   L  L + 
Sbjct: 181 NLLFSATFSPEIRTLAHGLLHNAAEVSVTPRNSAAESVKQWIVPVDKNQKPALLAELTRF 240

Query: 256 HQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIAT 315
           ++W QVLVF   K  A+ L ++++  GI A  +HG+KSQ+ R  ALA+FK G  ++LIAT
Sbjct: 241 YRWQQVLVFCRTKHGANRLVRQMDAEGIKAAAIHGNKSQNARTQALADFKRGAIRMLIAT 300

Query: 316 DLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATRT 375
           D+ ARGI I  LP V+NFELP   E YVHR+GRT RAG  G A SLVC+ E   L     
Sbjct: 301 DIAARGIDISELPNVVNFELPHVPEDYVHRIGRTGRAGASGEAASLVCNEEAKQLRDIER 360

Query: 376 LTQRELPVQNLEGF-PVTD-QPSTGESKRAPRDKQANRRTQNKKSVKQFQGKSR 427
           L ++ LP +   GF PV    PS  + K  P   +   +  NK   ++ QG+SR
Sbjct: 361 LIKQSLPRKEFVGFEPVHGLPPSENQGKSKPGGSKQGAKPGNKSQGRKPQGQSR 414