Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., DEAD-box ATP dependent DNA helicase (RefSeq) from Shewanella amazonensis SB2B

 Score =  260 bits (665), Expect = 5e-74
 Identities = 166/402 (41%), Positives = 238/402 (59%), Gaps = 11/402 (2%)

Query: 23  MSFSSLALSADLIQALPKA-ITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           MSF SL L+A L+Q L +     P+ IQ   IP +L+G+D+ A+A TGSGKT A+ LP+L
Sbjct: 1   MSFDSLGLAAPLLQTLIQCGYRTPTEIQAQSIPVLLSGRDLIAVAQTGSGKTAAFALPIL 60

Query: 82  ERLKTSPEQ---QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAE 138
           ++L     +   QALVLVPTRELA+QV++  T     LGL TL + GGV+   Q+ ALA 
Sbjct: 61  KQLSDKGLRGGIQALVLVPTRELAVQVADAFTRYSAGLGLTTLAVYGGVNIRPQRQALAA 120

Query: 139 NPNILVATTGRLFDLT-QSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQTV 197
             +ILVAT GRL DLT Q GL L  V TLVLDEADR+LDMGF P ++ +  Q  G  Q+ 
Sbjct: 121 GVDILVATPGRLLDLTGQFGLSLASVGTLVLDEADRMLDMGFAPDIEKIRRQL-GPHQSA 179

Query: 198 MCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQ 257
           M SA+F+   +  A++ +     ++A     I Q +   +++++K    + +  L+ +  
Sbjct: 180 MFSASFAQRERELAERWLSNAVSLAAKDTGRIPQQLALEVFMLDKPRWAEFVAELVGKRN 239

Query: 258 WPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATDL 317
           W Q LVF+ ++E +++L  +L   G+ A   HG+K+Q  R   L EFK+G  ++L+ATD+
Sbjct: 240 WRQALVFVSSREESNTLVAELALDGLQAAAFHGEKTQGARRRGLDEFKSGKLRLLVATDV 299

Query: 318 LARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDA-LNATRTL 376
            ARG+ IE LPVVI+  LP   E  +HR+GR+ARAG+ G+A+ +V   EM A L   + L
Sbjct: 300 AARGLDIEDLPVVISLGLPHGEEDLIHRLGRSARAGREGLAV-IVLSPEMRADLPLLKAL 358

Query: 377 TQRELPVQNLEGFPVTD---QPSTGESKRAPRDKQANRRTQN 415
                 V   EG+   D   Q     +   P  K ANR  +N
Sbjct: 359 CPALPEVITPEGYSPKDPLPQRYRDGALSTPGSKPANRSGRN 400