Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., DEAD-box ATP dependent DNA helicase (RefSeq) from Shewanella amazonensis SB2B

 Score =  259 bits (661), Expect = 1e-73
 Identities = 162/412 (39%), Positives = 227/412 (55%), Gaps = 15/412 (3%)

Query: 23  MSFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           MSF++  L + L   L K    EP+ +Q   IP ML G D+   A TG+GKT A+ LP+L
Sbjct: 1   MSFAAFTLPSPLANNLAKLGFVEPTEVQAGAIPMMLAGDDLMVKAATGTGKTAAFLLPIL 60

Query: 82  ERL-------KTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQN 134
            RL       +  P  +ALVLVPTREL  QV +    +     +    + GGV    Q N
Sbjct: 61  ARLLADEVASRNLPAPRALVLVPTRELCQQVYDAAKALAKGSAVRIAQVYGGVPLESQLN 120

Query: 135 ALAENPNILVATTGRLFD-LTQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGV 193
           A+    +++VAT GRL D L +  LR++ V+ LV DEADR+LDMGF  +++AL  + A  
Sbjct: 121 AIKGGVDLMVATPGRLLDHLKKRTLRIDTVSQLVFDEADRMLDMGFEDEIRALVKKLAKT 180

Query: 194 RQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALL 253
           RQT + SAT  D++   A+ LM +P  +           ++E +Y ++   K + +  LL
Sbjct: 181 RQTALFSATLGDNVWQLAKSLMDSPKLLEIAAAKDAKPLIEEQVYQLDSERKFEFICHLL 240

Query: 254 KQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLI 313
            ++ W QVL+F   KE AD LT KL +AG  A  +H D SQ +RE  LA+FK    +VL+
Sbjct: 241 GKNSWSQVLIFSRTKEGADKLTAKLVEAGHSAVAMHADLSQRQREQNLADFKAADARVLV 300

Query: 314 ATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNAT 373
           ATD+ ARG+ I+ LP +IN ELP   E YVHR+GRT RAG  G+A+SL+   +   L A 
Sbjct: 301 ATDVAARGLDIQALPCIINVELPFKKEDYVHRIGRTGRAGSAGLAISLLDVADEPLLVAL 360

Query: 374 RTLTQRELPVQNLEGFPVTDQPSTGESKRAPRDKQANRRTQNKKSVKQFQGK 425
                R LP Q   GF    +P    S R  R    ++  Q +K+ K+   K
Sbjct: 361 EHYLDRRLPQQWYPGF----EPDL--SIRHERPHSLSKAAQKQKARKRALAK 406