Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., ATP-dependent RNA helicase RhlE (RefSeq) from Shewanella amazonensis SB2B

 Score =  244 bits (622), Expect = 5e-69
 Identities = 153/418 (36%), Positives = 231/418 (55%), Gaps = 15/418 (3%)

Query: 23  MSFSSLALSADLIQALPKA-ITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           MSF+ L L+  +  AL      +P+ IQ   IP  L+G+++ A A TG+GKT A+GLPL+
Sbjct: 1   MSFARLGLAPAITSALESLNYQQPTEIQQKAIPVALSGRNLLAAAQTGTGKTAAFGLPLI 60

Query: 82  ERLKTSPEQQ-----ALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNAL 136
           ERL     ++     A++L PTREL +QV++ L+     L L  L + GGVD   Q+ AL
Sbjct: 61  ERLSQGKTERKKRVRAVILAPTRELVVQVADNLSAYAANLPLTVLAMYGGVDMQAQKQAL 120

Query: 137 AENPNILVATTGRLFDLT-QSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQ 195
               +ILVAT GRL D+  Q  +    +  LVLDEADR+LDMGF   +  L S+    RQ
Sbjct: 121 IAGVDILVATPGRLKDMYHQRAVYFEEIQVLVLDEADRMLDMGFIEVINDLISRMPTNRQ 180

Query: 196 TVMCSATFSDDLKLKAQQLMRAPTQVS-ANPENSINQAVQETLYLVNKGSKTQALVALLK 254
            ++ SAT S  ++  A+  +  P +++ A P     + + + L  V+K +K+  L  L++
Sbjct: 181 NLLFSATLSPRIRELAKTAVPDPVEIAIAKPSK---KEISQWLVTVDKDTKSALLSHLIQ 237

Query: 255 QHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIA 314
             QW Q L+FI  K  A  L  +L K GI A   H  +SQ+ RE  L+EFK+G+ Q L+A
Sbjct: 238 TEQWQQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAVREQVLSEFKDGSLQYLVA 297

Query: 315 TDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATR 374
           T + ARGI ++ L  V+N++LP   + Y+HR+GRT RAG  G A+SL+   +   L    
Sbjct: 298 TGVAARGIDVDKLERVVNYDLPFPPDEYIHRIGRTGRAGMTGEAVSLLSKDDFKNLCMIE 357

Query: 375 TLTQRELPVQNLEGF----PVTDQPSTGESKRAPRDKQANRRTQNKKSVKQFQGKSRT 428
           +     +  + +EGF    P+       + K  P+ + ++  +  + S    Q KSRT
Sbjct: 358 SRLGHVIERRVIEGFEPKKPIPVSILDYKPKSQPKAQPSSELSPQRNSQPSSQRKSRT 415