Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  271 bits (692), Expect = 3e-77
 Identities = 163/414 (39%), Positives = 240/414 (57%), Gaps = 15/414 (3%)

Query: 23  MSFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           M FS L+L A L QAL   A +E + IQ   IP +L+G D+ A A TG+GKT A+ LP+L
Sbjct: 1   MLFSQLSLPAPLQQALEALAFSEATQIQAEAIPLVLSGVDLMASAQTGTGKTAAFALPIL 60

Query: 82  ERLK-------TSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQN 134
            +L        +  + +ALVLVPTRELA+QV + ++       L+   + GGV    Q  
Sbjct: 61  AKLMGLAQAEGSDKQPRALVLVPTRELALQVHQGISDFARFTSLSAGLVYGGVSIEAQCQ 120

Query: 135 ALAENPNILVATTGRLFDLTQSGL-RLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGV 193
            LA   +++VAT GRL DL + G  +L+ V  LV DEADR+LDMGF  ++  L +     
Sbjct: 121 QLAAGVDLIVATPGRLLDLHRRGAAKLDGVAQLVFDEADRMLDMGFADEIAELMALLPSE 180

Query: 194 RQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALL 253
           RQT++ SAT  D +   + + ++ P +++ +P+NS +Q V++ +Y V+   K   L  L+
Sbjct: 181 RQTLLFSATLDDKVLALSHRWLKQPKRIAVSPQNSASQDVEQRVYAVDSERKFALLSHLI 240

Query: 254 KQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLI 313
            +  W +VLVF   K  AD L  +L + GI+A   HGD  Q  RE  LA+F+ G  +VL+
Sbjct: 241 NKGDWQRVLVFSRKKVAADKLAARLCEQGIMAKAFHGDLGQGAREQVLADFRRGEIKVLV 300

Query: 314 ATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNAT 373
           ATD+ ARGI IE L  V+N+ELP  A+ YVHR+GRT RAG+ G+A++L C  +   L   
Sbjct: 301 ATDVAARGIDIESLDYVVNYELPYVAQDYVHRIGRTGRAGKQGVAVTLYCEEDALLLEEI 360

Query: 374 RTLTQRELPVQNLEGFPVTDQPSTGESKRAPRDKQANRRTQNKKSVKQFQGKSR 427
             L  + LP Q L GF    +P    +K  P  ++  +  Q +++ ++ QG  R
Sbjct: 361 EALLDKRLPQQWLPGF----EPDL--TKADPNPRRNGKAAQKRRAKRRGQGGRR 408