Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  248 bits (632), Expect = 4e-70
 Identities = 154/435 (35%), Positives = 232/435 (53%), Gaps = 31/435 (7%)

Query: 23  MSFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           M+F++L L   ++  L +   ++P+ IQ   IP  L GK++ A A TGSGKT  + LP+L
Sbjct: 1   MTFANLGLPNAVLTNLEQLGYSQPTPIQQEAIPLALKGKNLIAAAQTGSGKTATFVLPML 60

Query: 82  ERLKTSPEQQ-----ALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNAL 136
             L     Q+     A++L PTREL +QV++ +   G  LGL ++ + GGVD   Q+  L
Sbjct: 61  TTLMQGQTQRKKRARAIILAPTRELVLQVNDRIGEYGKGLGLVSMAVYGGVDVQAQKQQL 120

Query: 137 AENPNILVATTGRLFDL-TQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQ 195
            E  +I+VAT GRL DL TQ  +R + V  LVLDEADR+LDMGF   +  +       RQ
Sbjct: 121 IEGVDIVVATPGRLRDLYTQRAIRFDEVELLVLDEADRMLDMGFIEDITKILDTLPEERQ 180

Query: 196 TVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQ 255
            ++ SAT S  ++  A+Q +     +S          +++ +  V+K  K+  L  L+K 
Sbjct: 181 NLLFSATLSRPVRELAKQAVPKAIHLSVTKNQDSQPDIEQWITTVDKDKKSALLSQLIKD 240

Query: 256 HQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIAT 315
           + WPQ L+FI  K  A  L  +L K GI A  +H  ++Q+ RE  LA+FK G    LI+T
Sbjct: 241 NAWPQALIFIETKHGAAKLVSQLEKRGIQAECIHSGRTQAVREQILADFKAGKIAYLIST 300

Query: 316 DLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATRT 375
            + ARGI I+ LP+VIN++LP  A+ YVHR+GRT RAG  G A+SLV   +   L    +
Sbjct: 301 GISARGIDIDNLPLVINYDLPFPADEYVHRIGRTGRAGAKGEAISLVSKDDFKNLCMIES 360

Query: 376 LTQRELPVQNLEGF------PVT------------------DQPSTGESKRAPRDKQANR 411
                L  + +EGF      P++                   + +  +  +AP++ +  R
Sbjct: 361 RLDHLLERREIEGFAPRKPVPISILNYVPKAKREQAQGEKGSEAAASQGVKAPKEAKDKR 420

Query: 412 RTQNKKSVKQFQGKS 426
           R    +   + QGK+
Sbjct: 421 REDKPRGQSKSQGKA 435