Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  265 bits (677), Expect = 2e-75
 Identities = 166/422 (39%), Positives = 232/422 (54%), Gaps = 21/422 (4%)

Query: 18  SGIQPMSFSSLALSA------DLIQALPKAI-----TEPSAIQTLVIPAMLTGKDVFALA 66
           S ++P + S+L+LS       +L++AL   +      + + IQ   IPA+L G+D+ A A
Sbjct: 9   SALEPSAPSALSLSTTDFSQLNLVKALQARLHHLGYQQATPIQAKAIPAILAGRDLLAGA 68

Query: 67  NTGSGKTLAYGLPLLERLKTSP-----EQQALVLVPTRELAMQVSEVLTHVGTALG--LN 119
            TGSGKT A+ LPLL++L            ALVLVPTRELA QV++     G  L     
Sbjct: 69  KTGSGKTAAFALPLLQKLVGQRAGGGNHVGALVLVPTRELAQQVADSFISYGAELAPRAK 128

Query: 120 TLCLCGGVDKTEQQNALAENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMG 178
            + + GGV    Q  AL    +ILVAT GRL DL  S  ++L+++  LVLDEADR+L++G
Sbjct: 129 VIAVFGGVSVNSQMLALRGGADILVATPGRLLDLLGSNAVKLSQLKALVLDEADRMLNLG 188

Query: 179 FWPQVQALASQTAGVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLY 238
           F  ++  +  Q    +QT++ SATF +++     +L+  P ++      S +  +++ +Y
Sbjct: 189 FTEELGEILKQLPDQKQTLLFSATFPEEVLSLTAKLLTDPVEIQMQEAQSAD--IEQRVY 246

Query: 239 LVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSERE 298
            VN+ +KT  L  L+K  QW QVLVF  AK + D L +KL K GI A V HGDK+Q  R 
Sbjct: 247 TVNRSNKTALLAELIKVRQWRQVLVFASAKRSCDHLAQKLEKRGISAQVFHGDKAQGARS 306

Query: 299 AALAEFKNGTTQVLIATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIA 358
             L  FKNG   VLIATD+ ARGI I+ LPVVINFELP     Y+HR+GR+ RAG+ G A
Sbjct: 307 RVLDGFKNGEITVLIATDIAARGIDIDKLPVVINFELPRSPADYLHRIGRSGRAGETGEA 366

Query: 359 LSLVCHGEMDALNATRTLTQRELPVQNLEGFPVTDQPSTGESKRAPRDKQANRRTQNKKS 418
           +SL+ H E           +  LP +   GF    +       R  +       T  KK 
Sbjct: 367 ISLISHDEYHHFKVIEKKNKLRLPREQYPGFEADAEAPLDCPSRQDKPMAKPEGTGKKKR 426

Query: 419 VK 420
            K
Sbjct: 427 KK 428