Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  250 bits (638), Expect = 7e-71
 Identities = 145/377 (38%), Positives = 218/377 (57%), Gaps = 8/377 (2%)

Query: 23  MSFSSLALSADLIQALPKA-ITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           M F S + + +++ A+ +    + + IQ   IPA+  G+DV A A TG+GKT A+ LP+L
Sbjct: 1   MRFESFSFAPEILHAISECGYQKMTPIQKEAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 82  ERLKTSPEQ------QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNA 135
           +++  SP        +AL+L PTREL  QV++ +      L ++ L + GGV    Q   
Sbjct: 61  QKMFDSPSDTQRSNTRALILAPTRELVAQVADNIKQYSRYLPISVLTVYGGVKMDTQAAK 120

Query: 136 LAENPNILVATTGRLFDLTQS-GLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVR 194
           + +  +I+VAT GRL +  Q+  L L+ V  LVLDEADR+LDMGF   +Q +  Q    R
Sbjct: 121 VKKGADIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFITDIQKILQQVNRDR 180

Query: 195 QTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLK 254
           Q ++ SATFS  +K  A +++  P  ++ + +N+    V + +Y V +  K + L  L+ 
Sbjct: 181 QNLLFSATFSSAVKQLANEMLVKPKLIAVDKQNTTAVTVSQVVYPVEQRRKRELLSELIG 240

Query: 255 QHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIA 314
           +  W QVLVF   +E AD L K+LN  GI + V+H +K+Q  R  AL EFK G  + L+A
Sbjct: 241 KKNWQQVLVFTATREAADVLVKELNLDGIPSAVVHSEKAQGNRRRALREFKEGKVRALVA 300

Query: 315 TDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATR 374
           T++ ARG+ I  L  V+NF+LP  AE YVHR+GRT RAG+ G+A+SLV   E   L    
Sbjct: 301 TEVAARGLDIPELEYVVNFDLPFLAEDYVHRIGRTGRAGRTGVAISLVSREEERTLADIE 360

Query: 375 TLTQRELPVQNLEGFPV 391
            L   ++    + G+ V
Sbjct: 361 KLIGNKIRRITIPGYEV 377