Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  305 bits (782), Expect = 2e-87
 Identities = 187/421 (44%), Positives = 251/421 (59%), Gaps = 17/421 (4%)

Query: 23  MSFSSLALSADLIQALP-KAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           MSF+SL LSA +++A+  K    PS IQ   IPA+L+GKDV A A TG+GKT  + LPLL
Sbjct: 1   MSFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 82  ERLKTSP-----EQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNAL 136
           E L   P     + +ALVL PTRELA Q++E +T  G  L L +  + GGV  + Q + L
Sbjct: 61  ELLSQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQISQL 120

Query: 137 AENPNILVATTGRLFDL-TQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQ 195
               +ILVAT GRL DL  Q  +  +++ TLVLDEADR+LDMGF   ++ + +     RQ
Sbjct: 121 KRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPKRQ 180

Query: 196 TVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQ 255
            +M SATFSD+++  A+ L+  P ++S  P NS    VQ+ +  V+K  K+ ALV L++Q
Sbjct: 181 NLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKLIQQ 240

Query: 256 HQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIAT 315
             W QVLVF   K  A+ L K L   GI A  +HG+KSQ  R  ALA FK+G  +VL+AT
Sbjct: 241 GDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVLVAT 300

Query: 316 DLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATRT 375
           D+ ARG+ I+ LP V+NF+LP   E YVHR+GRT RAG  G A+SLV   E   L     
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLADIER 360

Query: 376 LTQRELPVQNLEGF-PVTDQPST-------GESK--RAPRDKQANRRTQNKKSVKQFQGK 425
           L  + LP   +EGF P    P T       G+ K  R P+ K  ++R+ N+ S  Q   K
Sbjct: 361 LIGKLLPRAEVEGFEPTHTLPETNLTPKRHGQHKGPRNPKPKSNSQRSSNRSSNGQRSDK 420

Query: 426 S 426
           +
Sbjct: 421 A 421