Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 535 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  295 bits (755), Expect = 2e-84
 Identities = 177/383 (46%), Positives = 234/383 (61%), Gaps = 8/383 (2%)

Query: 23  MSFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           MSFS+L LSA L +A+ +     PS IQ   IPA+LTGKDV A A TG+GKT  + LPLL
Sbjct: 1   MSFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 82  ERLKT-----SPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNAL 136
           E L       S + +ALVL PTRELA QV E +   G  L L +  + GGV    Q N L
Sbjct: 61  ELLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKL 120

Query: 137 AENPNILVATTGRLFDLTQ-SGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQ 195
               ++LVAT GRL DL Q + ++ N++  LVLDEADR+LDMGF   ++ + +     RQ
Sbjct: 121 RHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 180

Query: 196 TVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQ 255
            +M SATFSD+++  A+ L+  P ++S  P N+    V++ +  V+K  K+  L+ L+KQ
Sbjct: 181 NLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALLIQLIKQ 240

Query: 256 HQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIAT 315
             W QVLVF   K  A+ L K L +A I A  +HG+KSQ  R  ALA+FK+G  +VL+AT
Sbjct: 241 ENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVAT 300

Query: 316 DLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATRT 375
           D+ ARG+ I+ LP V+NF+LP   E YVHR+GRT RAG  G A+SLV   E+  L     
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDIER 360

Query: 376 LTQRELPVQNLEGF-PVTDQPST 397
           L  R L  Q +EGF PV   P T
Sbjct: 361 LINRVLERQEVEGFSPVHALPET 383