Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  280 bits (715), Expect = 8e-80
 Identities = 162/411 (39%), Positives = 232/411 (56%), Gaps = 15/411 (3%)

Query: 23  MSFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           MSFS+L+L+  L+  L +    +P+ IQ   IPA+LT +DV A A TG+GKT A+ LP+L
Sbjct: 1   MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60

Query: 82  ERLKTSPEQ-------QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQN 134
           + L    +        +ALVLVPTRELA+QV +          +      GGV    QQ 
Sbjct: 61  QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120

Query: 135 ALAENPNILVATTGRLFD-LTQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGV 193
                 ++L+AT GRL D L Q  L LN++ TLV DEADR+LDMGF  ++QA+  Q    
Sbjct: 121 VFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180

Query: 194 RQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALL 253
           RQT++ SAT  D +   ++ L+R P ++     N+    +++ +Y ++   KT+ +  L+
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTEFVSHLV 240

Query: 254 KQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLI 313
           +   W QVL+F   K+  D LT +LNK G+     HGD SQ  RE  L EFK G  QVL+
Sbjct: 241 RSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLV 300

Query: 314 ATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNAT 373
           ATD+ ARG+ I  L  VINFELP  AE Y+HR+GRT RAG  G+A++L    +   L   
Sbjct: 301 ATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEV 360

Query: 374 RTLTQRELPVQNLEGFPVTDQPSTGESKRAPRDKQANRRTQNKKSVKQFQG 424
            TL  + LP Q   GF    +P    +K  P  ++ ++  Q +++ K+  G
Sbjct: 361 ETLLDKRLPQQWYPGF----EPDF--NKMLPEPRRNSKAAQKQRAKKRALG 405