Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  266 bits (679), Expect = 1e-75
 Identities = 160/418 (38%), Positives = 235/418 (56%), Gaps = 18/418 (4%)

Query: 24  SFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLLE 82
           SF+ L + A L   L +     P+ +Q   IPA+L+G+DV A ANTGSGKT A+ LPLL+
Sbjct: 10  SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69

Query: 83  RL-------KTSPEQQALVLVPTRELAMQVSEVLTHVGTALG--LNTLCLCGGVDKTEQQ 133
           RL       K++   + LVLVPTRELA QV++      +     L  +   GGV    Q 
Sbjct: 70  RLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQM 129

Query: 134 NALAENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAG 192
            +L    ++LVAT GRL DL  S  L+L +V+  VLDEADR+L +GF  +++ + +    
Sbjct: 130 QSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPR 189

Query: 193 VRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVAL 252
            +QT++ SATF ++++    +L+  P +     E      +++ +  VN+  KT  L  L
Sbjct: 190 QKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQE--STIEQRVITVNREQKTALLAHL 247

Query: 253 LKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVL 312
           +KQHQW Q L+F+ AK   + L +KL+K GI A V HGDK+Q  R   L  FKNG   VL
Sbjct: 248 IKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVL 307

Query: 313 IATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNA 372
           IATD+ ARGI I+ LPVVINF+LP     Y+HR+GR+ RAG+ G+A++L+ H E      
Sbjct: 308 IATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGV 367

Query: 373 TRTLTQRELPVQNLEGFPVTDQ-PSTGESKRAPRDKQANRRTQNKKSVK----QFQGK 425
                + +L  + + GF    + P    ++  P+ K      + +K +     +F GK
Sbjct: 368 IEKKNKIKLVREQIPGFEANAEIPLEVLAQEKPQAKPEGTGKKKRKQLPAANVEFWGK 425