Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  255 bits (651), Expect = 2e-72
 Identities = 145/374 (38%), Positives = 217/374 (58%), Gaps = 7/374 (1%)

Query: 23  MSFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           M FS L L + L++A+ +     P+ IQT  IP++L GK+V A A TG+GKT ++ LPLL
Sbjct: 1   MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

Query: 82  ERLKTSPE-----QQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNAL 136
            R   +P+      ++++L PTRELA+QV + +      L L  + + GGVD   Q+  L
Sbjct: 61  HRFADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRL 120

Query: 137 AENPNILVATTGRLFDL-TQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQ 195
            E  ++LVAT GRL D+ TQ  +R + V+ LVLDEADR+LDMGF   +  +  +    RQ
Sbjct: 121 IEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQ 180

Query: 196 TVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQ 255
            ++ SAT S  +K  A+  +    ++  + +N+ +  + + L  V+K  K+  L  L+K+
Sbjct: 181 NLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKSALLSHLIKE 240

Query: 256 HQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIAT 315
           + W Q L+FI  K  A  L  +L K GIVA   H  +SQ+ RE  L +FK G    L+AT
Sbjct: 241 NNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVAT 300

Query: 316 DLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATRT 375
            +++RGI I+ L  VIN++LP  A+ Y+HR+GRT RAG  G A+S V   +   L A   
Sbjct: 301 GVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIER 360

Query: 376 LTQRELPVQNLEGF 389
                +  +N+EGF
Sbjct: 361 RLGHIIERKNIEGF 374