Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  274 bits (701), Expect = 4e-78
 Identities = 170/423 (40%), Positives = 244/423 (57%), Gaps = 20/423 (4%)

Query: 23  MSFSSLALSADLIQALPKA-ITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           M F +L LS+ L+ A+ +    + + +Q  VIP  L GKD+ A A TG+GKT A+ LP+L
Sbjct: 1   MKFDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVL 60

Query: 82  ERLKTSPEQQ----ALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALA 137
           E+L   P  +    ALV+ PTRELA+QV   +      L L TL + GG +   Q+  + 
Sbjct: 61  EQLAAKPADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVE 120

Query: 138 ENPNILVATTGRLFDLT-QSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 196
           +  +ILVAT GRLFD+  Q  L L+ VTTLV+DEADR+LD+GF   ++ +    A V QT
Sbjct: 121 QGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQT 180

Query: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 256
           ++ SAT+SD +K  + +++  P  V+   EN+    V++ +Y V+K  K + L  L+ ++
Sbjct: 181 MLFSATYSDAVKQLSHKMLNQPQWVNV-AENTTASTVEQLVYRVDKRRKAELLSELVGRN 239

Query: 257 QWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATD 316
            W QVLVF   KE A+ L ++L   GI A V HGDK+Q  R   L +FK G  +VL+ATD
Sbjct: 240 NWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATD 299

Query: 317 LLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATRTL 376
           + ARG+ I+ LP+VIN ELP  AE YVHR+GRT RAG  G A+S V   + + L     L
Sbjct: 300 VAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEAL 359

Query: 377 TQRELPVQNLEGFP--------VTDQP----STGESKRAPRDKQANRRTQNKKSVKQFQG 424
              +LPV    G+           D P     T  S +AP+D+   + +   KS  + Q 
Sbjct: 360 IGEKLPVTVQPGYEEGTPLPARYRDLPVVTTKTKWSYKAPKDRTIGKSSAGGKS-SESQA 418

Query: 425 KSR 427
           ++R
Sbjct: 419 RAR 421