Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  400 bits (1029), Expect = e-116
 Identities = 227/432 (52%), Positives = 293/432 (67%), Gaps = 27/432 (6%)

Query: 21  QPMSFSSLALSADLIQALPKAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPL 80
           + ++F+ L L+A L +ALP  +  P+ +Q L IPA+L G+D+ AL+ TGSGKT A+GLPL
Sbjct: 15  ESLTFAELGLNAALRKALPTRLKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPL 74

Query: 81  LERL----------KTSPEQQ--ALVLVPTRELAMQVSEVL----THVGTALGLNTLCLC 124
           L+ L          K+ P  +  ALVLVPTRELA+QVSE L    + + T+  LN   LC
Sbjct: 75  LQILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLC 134

Query: 125 GGVDKTEQQNALAENPNILVATTGRLFDL-TQSGLRLNRVTTLVLDEADRLLDMGFWPQV 183
           GGV   +Q   L+  P ++VAT GRL DL TQS + L+ +  LVLDEADRLL+MGFWP +
Sbjct: 135 GGVALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDM 194

Query: 184 QALASQTAGVRQTVMCSATFSDDL-KLKAQQLMRAPTQVSANPENSINQAVQETLYLVNK 242
           Q L +     +QT++ SAT  + L  L  + L   P +V A+  N++   ++E LYLVNK
Sbjct: 195 QKLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNK 254

Query: 243 GSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALA 302
           GSK QAL+ALLKQ+QWPQVLVFI A+++AD++ K+L KAGI A  LHG+K Q+ R   LA
Sbjct: 255 GSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLA 314

Query: 303 EFKNGTTQVLIATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLV 362
           +FK    QVL+ATDL+ARGIH++ LPVVIN +LP  A  YVHR+GRTARAG  G+A+SLV
Sbjct: 315 DFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLV 374

Query: 363 CHGEMDALNATRTLTQRELPVQNLEGFPVTDQPST-----GES----KRAPRDKQANRRT 413
           CHGEM  L A R LT R LP+  L  FPVTD+PS       E+    KR PRDKQANRR+
Sbjct: 375 CHGEMPNLTAIRNLTARALPLVFLADFPVTDKPSEKIIDGAENKVIPKRPPRDKQANRRS 434

Query: 414 QNKKSVKQFQGK 425
            NK SVK F+GK
Sbjct: 435 INKHSVKAFKGK 446