Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 537 a.a., superfamily II DNA/RNA helicase from Paraburkholderia graminis OAS925

 Score =  238 bits (606), Expect = 4e-67
 Identities = 154/425 (36%), Positives = 219/425 (51%), Gaps = 30/425 (7%)

Query: 7   AIIRPTLFFEYSGIQPMSFSSLALSADLIQALPKA-ITEPSAIQTLVIPAMLTGKDVFAL 65
           A   P +  E +     SF+SL LSAD++ AL  A    P+ +Q   +PA + G+D+   
Sbjct: 34  AAAAPAVAAEAAAPAGPSFASLGLSADVVSALTAAGYQNPTPVQQRAVPAAIAGRDLMVS 93

Query: 66  ANTGSGKTLAYGLPLLERLKTSPEQQA--------------------------LVLVPTR 99
           + TGSGKT A+ LP +ER     + QA                          LVL PTR
Sbjct: 94  SPTGSGKTAAFMLPAIERFSQLQKAQASQPREPRPADGARNTRRPQPVARPTMLVLTPTR 153

Query: 100 ELAMQVSEVLTHVGTALG-LNTLCLCGGVDKTEQQNALAENPNILVATTGRLFDLTQSG- 157
           ELAMQV+      G  L  L T+ + GGV   +Q   LA+NP ILVAT GRL D  + G 
Sbjct: 154 ELAMQVTTAAATYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGR 213

Query: 158 LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQTVMCSATFSDDLKLKAQQLMRA 217
           + L+++  LVLDEADR+LDMGF   ++ + + T   RQT++ SAT    +     +L++ 
Sbjct: 214 IDLSQLQILVLDEADRMLDMGFIEDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKD 273

Query: 218 PTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQHQWPQVLVFIGAKENADSLTK 276
           P ++           + +T++ V+ +  K + L  LL+     Q +VF   K +AD L  
Sbjct: 274 PERIEIVQRLEQRTNIAQTVHYVDDRDHKDRLLDHLLRDEGLDQAIVFTATKMDADQLAG 333

Query: 277 KLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATDLLARGIHIELLPVVINFELP 336
           +L  AG  +  LHGD  Q  R   +   +    +VL+ATD+ ARGI I  +  V N++LP
Sbjct: 334 RLADAGFESAALHGDLPQGARNRTIKALRERRVRVLVATDVAARGIDIPGITHVFNYDLP 393

Query: 337 MHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATRTLTQRELPVQNLEGFPVTDQPS 396
             AE YVHR+GRT RAG+ GIA+SLV H E  AL       +  LPV  + GF       
Sbjct: 394 KFAEDYVHRIGRTGRAGRSGIAVSLVHHAEQGALKRIERFVRTPLPVNVVVGFEPRKSAP 453

Query: 397 TGESK 401
           +G  +
Sbjct: 454 SGNGR 458