Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 374 a.a., putative ATP-dependent RNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  258 bits (659), Expect = 2e-73
 Identities = 141/367 (38%), Positives = 223/367 (60%), Gaps = 8/367 (2%)

Query: 23  MSFSSLALSADLIQALP-KAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           M+F  L ++  +++A+  K  T P+ IQ   IP  L  KD+   A TG+GKT ++ +P++
Sbjct: 1   MTFKELNITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPII 60

Query: 82  ERLKTSP------EQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNA 135
           + L  +       E +AL+L PTRELA+Q+SE +        +    + GGV++  Q + 
Sbjct: 61  QHLHLNKGEGKRSEIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVDM 120

Query: 136 LAENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVR 194
           L +  +ILVAT GRL DL   G +RL+ +   VLDEADR+LDMGF   ++ +  +    +
Sbjct: 121 LHKGIDILVATPGRLLDLMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180

Query: 195 QTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLK 254
           QT+  SAT  D +      L++ P ++   P++S   ++++ +Y V K  K+  L+++L+
Sbjct: 181 QTLFFSATMPDTIIALTNSLLKNPVKIYVTPKSSTVDSIKQLVYFVEKKEKSLLLISILQ 240

Query: 255 QHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIA 314
           + +   VL+F   K NAD + K L KAGI +  +HG+KSQ+ R++AL  FK+G T+V++A
Sbjct: 241 KSEDRSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVA 300

Query: 315 TDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATR 374
           TD+ +RGI I  LP+VIN++LP   ETYVHR+GRT RAG  G+AL+     E   +N  +
Sbjct: 301 TDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGMALTFCSQEERKQINDIQ 360

Query: 375 TLTQREL 381
            LT ++L
Sbjct: 361 KLTGKKL 367