Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., RNA helicase from Burkholderia phytofirmans PsJN

 Score =  240 bits (613), Expect = 7e-68
 Identities = 153/407 (37%), Positives = 215/407 (52%), Gaps = 29/407 (7%)

Query: 24  SFSSLALSADLIQALPKA-ITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLLE 82
           SF+SL LSAD++ AL  A    P+ +Q   IPA + G+D+   + TGSGKT A+ LP +E
Sbjct: 49  SFASLGLSADVVSALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIE 108

Query: 83  RLKTSPEQQA-------------------------LVLVPTRELAMQVSEVLTHVGTALG 117
           R     + QA                         LVL PTRELAMQV+      G  L 
Sbjct: 109 RFSQLQKAQASQPREPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLK 168

Query: 118 -LNTLCLCGGVDKTEQQNALAENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLL 175
            L T+ + GGV   +Q   LA+NP ILVAT GRL D  + G + L+++  LVLDEADR+L
Sbjct: 169 RLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRML 228

Query: 176 DMGFWPQVQALASQTAGVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQE 235
           DMGF   ++ + + T   RQT++ SAT    +     +L++ P ++           + +
Sbjct: 229 DMGFIEDIETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRLEQRTNIAQ 288

Query: 236 TLYLVN-KGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQ 294
           T++ V+ +  K + L  LL+     Q +VF   K +AD L  +L  AG  +  LHGD  Q
Sbjct: 289 TVHYVDDRDHKDRLLDHLLRDEGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQ 348

Query: 295 SEREAALAEFKNGTTQVLIATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQ 354
             R   +   +    +VL+ATD+ ARGI I  +  V N++LP  AE YVHR+GRT RAG+
Sbjct: 349 GARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGR 408

Query: 355 HGIALSLVCHGEMDALNATRTLTQRELPVQNLEGFPVTDQPSTGESK 401
            GIA+SLV H E  AL       +  LPV  +EGF       +G  +
Sbjct: 409 SGIAVSLVHHAEQGALKRIERFVRTPLPVNVVEGFEPRKSAPSGNGR 455