Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  271 bits (692), Expect = 4e-77
 Identities = 161/414 (38%), Positives = 226/414 (54%), Gaps = 14/414 (3%)

Query: 23  MSFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           MSFS+L+L + L+  L +    +P+ IQ   IPA+L  +DV A A TG+GKT A+ LP+L
Sbjct: 1   MSFSALSLHSQLVNTLAELGYQQPTPIQIEAIPAILAKQDVMAGAQTGTGKTAAFALPIL 60

Query: 82  ERLKTSPEQQ-------ALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQN 134
           ++L    E Q       ALVLVPTRELA+QV +          +      GGV    QQ 
Sbjct: 61  QQLLIDNESQDAPKDVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120

Query: 135 ALAENPNILVATTGRLFD-LTQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGV 193
                 ++L+AT GRL D L Q  L L R++ LV DEADR+LDMGF  +++A+  Q    
Sbjct: 121 EFKAGIDVLIATPGRLLDHLRQGALNLKRLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQ 180

Query: 194 RQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALL 253
           RQT++ SAT  D +   ++ L+R P  +     N+    V++ +Y ++   KT+ +  L+
Sbjct: 181 RQTLLFSATLDDSIFGFSKNLLRDPKLIEVAKRNTTAAQVEQRVYAIDSDRKTEFVSHLV 240

Query: 254 KQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLI 313
           +   W QVL+F   K+  D LT +LN+ G+     HGD SQ  RE  L +FK G  QVL+
Sbjct: 241 RSKNWQQVLIFSRTKQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQVLV 300

Query: 314 ATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNAT 373
           ATD+ ARG+ I  L  VINFELP  AE Y+HR+GRT RAG  G+A++L    +   L   
Sbjct: 301 ATDVAARGLDIADLQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEV 360

Query: 374 RTLTQRELPVQNLEGFPVTDQPSTGESKRAPRDKQANRRTQNKKSVKQFQGKSR 427
             L  + LP Q   GF    +P   + +  PR      + Q  K  +   GK R
Sbjct: 361 EALLDKRLPQQWYPGF----EPDFNKMEPEPRRNSKAAQKQRAKK-RALGGKKR 409