Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  294 bits (752), Expect = 6e-84
 Identities = 181/406 (44%), Positives = 238/406 (58%), Gaps = 16/406 (3%)

Query: 23  MSFSSLALSADLIQALPKAITE-----PSAIQTLVIPAMLTGKDVFALANTGSGKTLAYG 77
           MSFSSL LSA +     KA+TE     PS IQ   IPA+LTGKDV A A TG+GKT  + 
Sbjct: 1   MSFSSLGLSAPI----QKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFT 56

Query: 78  LPLLERLKTSPEQQA-----LVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQ 132
           LPLLE L    + +A     LVL PTRELA QVSE +   G  L L +  + GGV    Q
Sbjct: 57  LPLLELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQ 116

Query: 133 QNALAENPNILVATTGRLFDLTQS-GLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTA 191
              L    ++LVAT GRL DL Q   ++ N++  LVLDEADR+LDMGF   ++ + +   
Sbjct: 117 IQKLRHGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLP 176

Query: 192 GVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVA 251
             RQ +M SATFSD+++  A+ L+  P ++S  P N+    V++ +  V+K  K+  L+ 
Sbjct: 177 AKRQNLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQ 236

Query: 252 LLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQV 311
           L+KQ  W QVLVF   K  A+ L K L +A I A  +HG+KSQ  R  ALA+FK+G  +V
Sbjct: 237 LIKQEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRV 296

Query: 312 LIATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALN 371
           L+ATD+ ARG+ I+ LP V+NF+LP   E YVHR+GRT RAG  G A+SLV   E   L 
Sbjct: 297 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLR 356

Query: 372 ATRTLTQRELPVQNLEGF-PVTDQPSTGESKRAPRDKQANRRTQNK 416
               L  R L  Q +EGF PV   P +  +     +K     +Q K
Sbjct: 357 DIERLINRVLERQEVEGFSPVHTLPESTLNAHGKENKIKAVASQRK 402