Pairwise Alignments

Query, 444 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., Na+ driven multidrug efflux pump from Pseudomonas fluorescens FW300-N2E2

 Score = 86.7 bits (213), Expect = 1e-21
 Identities = 91/393 (23%), Positives = 176/393 (44%), Gaps = 20/393 (5%)

Query: 35  DSAFIGQ-LGVLPLAAQGFTMPIQMVIIGIQVGLGIATTAVISRAIGAGKTEYAKQLGGL 93
           +S +IGQ LG   LAA     PI    I + +GLG     +I +A GAG+T   K + G 
Sbjct: 15  NSIYIGQMLGTQALAAVSGMFPIVFFFIALVIGLGAGAGVLIGQAYGAGETGTVKAIAGS 74

Query: 94  VIVIGG-IGVALIALVLYLLRQPLLGLLGAPETVFAIIDHY---WLWWLASAWTGAMLYF 149
            +++G  IG+A   L     RQ L G LG P  V      Y    LW L       +   
Sbjct: 75  TLLLGAIIGLAAAVLGSVFARQALQG-LGTPADVLEDAVSYARVMLWILPML---LIFVL 130

Query: 150 YYSVCRANGNTLLPGTLMMVTSVLNLILDPIFIFTF----DLGIDGAAIATIIAFGVGIA 205
           +  + R   +T+ P   ++ ++ + L+L P  I  +     +GI  AA+A ++     +A
Sbjct: 131 FTQLLRGVSDTVSPMLALLTSTSVGLLLTPALIRGWLGLPQMGIQSAALAGLVGTASAMA 190

Query: 206 IVAPKVAQRQWTSYQWQDLNISQSL--TALGHIMG---PAMLSQLLPPLSSMFATKLLAS 260
           ++A ++ +R+      + L  +  L    LG ++    P  L  ++  LS +    L+ S
Sbjct: 191 MLAWRLNRREHALAPDRALFAAMRLDMEILGKVLRIGLPTGLQMVVISLSELVILTLVNS 250

Query: 261 FGTAAVAAWALGSRFEFFALVAVLAMTMSLPPMIGRMLGAKEITHIRQLVRIACQFVLGF 320
            G+ A AA+   ++   +     L++ ++   +  + +GA  +  +  ++R      L  
Sbjct: 251 HGSQATAAYGAVTQIVNYVQFPALSIAITASILGAQAIGAGRLERLGPILRTGLLINLWL 310

Query: 321 QLLIALVTYVFATPLAELMTSETEVSQILNLHLVIVPI-SLGALGICMLMVSVANALGKS 379
              + ++ Y+ +  L  L  ++   +++   HL+ + + SL   G   ++  +  A G  
Sbjct: 311 TGGLVVLGYLLSHWLLGLFITD-PAARVQAEHLLHIMLWSLLVFGFQAIVGGIMRASGTV 369

Query: 380 YVALTISALRLFAFYLPCLWLGAHFYGIEGLFI 412
            V + IS   +    +P  +L    +G++G+++
Sbjct: 370 LVPVAISIFCIVVVQVPAAYLLDAHFGLQGVWV 402



 Score = 35.8 bits (81), Expect = 3e-06
 Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 11/195 (5%)

Query: 241 MLSQLLPPLSSMFATKLLASF-GTAAVAAWALGSRFEFFALVAVLAMTMSLPPMIGRMLG 299
           +LS  L  +S  F +  +    GT A+AA +      FF +  V+ +      +IG+  G
Sbjct: 2   VLSNFLQSMSGTFNSIYIGQMLGTQALAAVSGMFPIVFFFIALVIGLGAGAGVLIGQAYG 61

Query: 300 AKEITHIRQLVRIACQFVLGFQLLIALVTYVFATPLAELMTSETEVSQ----ILNLHLVI 355
           A E   ++ +            L  A++  VFA    + + +  +V +       + L I
Sbjct: 62  AGETGTVKAIAGSTLLLGAIIGLAAAVLGSVFARQALQGLGTPADVLEDAVSYARVMLWI 121

Query: 356 VPISLGALGICMLMVSVANALGKSYVALTISALRLFAFYLPCL---WLGAHFYGIEGLFI 412
           +P+ L  +    L+  V++ +      LT +++ L     P L   WLG    GI+   +
Sbjct: 122 LPMLLIFVLFTQLLRGVSDTVSPMLALLTSTSVGLLL--TPALIRGWLGLPQMGIQSAAL 179

Query: 413 GALVGNIIA-GWAAW 426
             LVG   A    AW
Sbjct: 180 AGLVGTASAMAMLAW 194



 Score = 29.3 bits (64), Expect = 3e-04
 Identities = 34/169 (20%), Positives = 66/169 (39%), Gaps = 1/169 (0%)

Query: 32  QLVDSAFIGQLGVLPLAAQGFTMPIQMVIIGIQVGLGIATTAVISRAIGAGKTEYAKQLG 91
           +LV    +   G    AA G    I   +    + + I  + + ++AIGAG+ E    + 
Sbjct: 241 ELVILTLVNSHGSQATAAYGAVTQIVNYVQFPALSIAITASILGAQAIGAGRLERLGPIL 300

Query: 92  GLVIVIGGIGVALIALVLYLLRQPLLGLLGAPETVFAIIDHYWLWWLASAWTGAMLYFYY 151
              ++I       + ++ YLL   LLGL           +H     L S           
Sbjct: 301 RTGLLINLWLTGGLVVLGYLLSHWLLGLFITDPAARVQAEHLLHIMLWSLLVFGFQAIVG 360

Query: 152 SVCRANGNTLLPGTLMMVTSVLNLILDPIFIFTFDLGIDGAAIATIIAF 200
            + RA+G  L+P   + +  ++ + +   ++     G+ G  +A  +A+
Sbjct: 361 GIMRASGTVLVP-VAISIFCIVVVQVPAAYLLDAHFGLQGVWVAFPVAY 408