Pairwise Alignments

Query, 444 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps from Pseudomonas fluorescens FW300-N2E2

 Score = 74.7 bits (182), Expect = 5e-18
 Identities = 103/437 (23%), Positives = 181/437 (41%), Gaps = 53/437 (12%)

Query: 14  LFQMTWPMLFGVLSLMSFQLVDSAFIGQLGVLPLAAQGFTMPIQMVIIGIQVGLGIATTA 73
           L  +  P++   L+  +   VD+   G++G   LAA      I + +  +  G  +ATT 
Sbjct: 1   LLALALPIMVAQLATTAMGFVDAVMAGRVGPRDLAAVALGNSIWVPVFLLMTGTLLATTP 60

Query: 74  VISRAIGAGK----TEYAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGA-PETVFA 128
            +++  GAG         +Q   L +V+G     LIA +     +P+L ++   PE +  
Sbjct: 61  KVAQRFGAGTFAEIGPLVRQALWLALVVG-----LIASLALFSAEPILHIMNVDPELIGP 115

Query: 129 IIDHYWLWWLASAWTGAMLYFYYSVCR----ANGNTLLPGTLMMVTSVLNLILDPIFIFT 184
            ++     +L    TG      Y V R      G T     L +    LN+ L+ IFI+ 
Sbjct: 116 CME-----YLRGIGTGLPAVALYHVLRCFSDGLGRTRPAMVLGLCGLALNIPLNYIFIYG 170

Query: 185 FDLGIDG----------AAIATIIAFGV-GIAIVAPKV-AQRQWTSYQWQDLNISQSLTA 232
             LG+            A +  ++A G+ G A  AP   + R ++ + W    + + L  
Sbjct: 171 -HLGVPAMGGVGCGWATAIVMWVMALGMAGWARWAPAYQSSRLFSRFDWPQWAVIKRLLG 229

Query: 233 LGHIMGPAMLSQLLPPLSSMFA--TKLLASFGTAAVAAWALGSRFEFFALVAVLAMTMSL 290
           +G  +G A+ ++     SS+FA    L+ S G   VA   +   F     +   ++ M++
Sbjct: 230 IGLPIGIAVFAE-----SSIFAVIALLIGSLGATVVAGHQIALNFSSLVFMIPYSLGMAV 284

Query: 291 PPMIGRMLGAKEITHIRQLVRIACQFVLGFQLLIALVTYVFATPLAELMTSETEVSQILN 350
              +G+ LG  +    R    +     L +  L A + +    P+A + T++  V ++ +
Sbjct: 285 TVRVGQALGRAQPREARFAAGVGMGTALAYACLSASLMFALRGPIAAIYTADPVVIEVAS 344

Query: 351 LHLVIVPISLGALGICMLMVSVANALGKSYVALTISALRLFAFY---LP-------CLWL 400
           + +V   +   +  I    V+ A AL           L LFA++   LP         WL
Sbjct: 345 MLIVYAALFQFSDAI---QVTAAGALRGYQDTRVTMILTLFAYWGIGLPVGYALGLTDWL 401

Query: 401 GAHFYGIEGLFIGALVG 417
           GA   G  GL+ G +VG
Sbjct: 402 GA-ASGPSGLWQGLIVG 417



 Score = 39.3 bits (90), Expect = 3e-07
 Identities = 27/121 (22%), Positives = 52/121 (42%)

Query: 9   SLAKQLFQMTWPMLFGVLSLMSFQLVDSAFIGQLGVLPLAAQGFTMPIQMVIIGIQVGLG 68
           ++ K+L  +  P+   V +  S   V +  IG LG   +A     +    ++  I   LG
Sbjct: 222 AVIKRLLGIGLPIGIAVFAESSIFAVIALLIGSLGATVVAGHQIALNFSSLVFMIPYSLG 281

Query: 69  IATTAVISRAIGAGKTEYAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGAPETVFA 128
           +A T  + +A+G  +   A+   G+ +        L A +++ LR P+  +  A   V  
Sbjct: 282 MAVTVRVGQALGRAQPREARFAAGVGMGTALAYACLSASLMFALRGPIAAIYTADPVVIE 341

Query: 129 I 129
           +
Sbjct: 342 V 342