Pairwise Alignments

Query, 444 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 505 a.a., MATE efflux family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  146 bits (368), Expect = 2e-39
 Identities = 112/425 (26%), Positives = 207/425 (48%), Gaps = 6/425 (1%)

Query: 10  LAKQLFQMTWPMLFGVLSLMSFQLVDSAFIGQLGVLPLAAQ-GFTMPIQMVIIGIQVGLG 68
           + + +  M+     G+ +L    L+D  F+  LG   LAA  G+   I      I +GL 
Sbjct: 11  ILRHILVMSSTAAVGISALFLVDLLDIFFLSLLGEAELAAAVGYAGTISFFTTSIGIGLS 70

Query: 69  IATTAVISRAIGAGKTEYAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGAPETVFA 128
           IA  A +SRAIGA + + AK+L    +++     +L++L++ L    LL L+GA      
Sbjct: 71  IALGAQVSRAIGAREIDNAKRLLMSSLLVTLAVSSLVSLLVSLNIPALLTLVGATGQTAE 130

Query: 129 IIDHYWLWWLASAWTGAMLYFYYSVCRANGNTLLPGTLMMVTSVLNLILDPIFIFTFDLG 188
           +   Y    + S     +     +  RA G+  L     +V   +NL+LDPI IF   +G
Sbjct: 131 LAADYLYILVPSLPFICLAMALGAALRAVGDAKLSMVSTLVGGGVNLVLDPILIFVLAMG 190

Query: 189 IDGAAIATIIAFGVGIAIVAPK--VAQRQWTSYQWQDLNISQSLTALGHIMGPAMLSQLL 246
           I+GAA+A+++A  + + +VA +    +    S   +D  +   L  +  I GPAM++ + 
Sbjct: 191 IEGAAVASVLA-RLSVMLVAGRGVFVKHGLGSKPTRDAFVGD-LKPIFAIAGPAMITNVA 248

Query: 247 PPLSSMFATKLLASFGTAAVAAWALGSRFEFFALVAVLAMTMSLPPMIGRMLGAKEITHI 306
            P+ + F T+ +A FG A VA WA+  R    A   + A++ ++ P++G+  GA+    +
Sbjct: 249 TPIGNGFMTRAIAEFGDAYVAGWAVLGRLTPVAFGMIFALSGAIGPIVGQNFGARRYDRL 308

Query: 307 RQLVRIACQFVLGFQLLIALVTYVFATPLAELMTSETEVSQILNLHLVIVPISLGALGIC 366
           R  +  +  F   + + +ALV ++    +      + + ++ +   L  + +     G  
Sbjct: 309 RDCLTQSLLFCTVYVVGMALVLFLAQDLIVSAFDLKGDSAEFIGFFLTYIAVFFVFSGAL 368

Query: 367 MLMVSVANALGKSYVALTISALRLFAFYLPCLWLGAHFYGIEGLFIGALVGNIIAGWA-A 425
            +  +  N LGK+  +   +  +     LP +WLGA + G+ G+ IG ++G+++ G A  
Sbjct: 369 FVANASFNNLGKAKYSTVFNVGKATLGTLPFIWLGAQYGGVYGVLIGQVLGSVLFGVAGV 428

Query: 426 WLAYQ 430
           + AY+
Sbjct: 429 YTAYR 433