Pairwise Alignments

Query, 444 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., MATE efflux family protein (RefSeq) from Shewanella loihica PV-4

 Score =  153 bits (387), Expect = 1e-41
 Identities = 105/415 (25%), Positives = 199/415 (47%), Gaps = 1/415 (0%)

Query: 9   SLAKQLFQMTWPMLFGVLSLMSFQLVDSAFIGQLGVLPLAAQ-GFTMPIQMVIIGIQVGL 67
           S+ + +  M+     G+ +L    L+D  F+  LG   LAA  G+   I      I +GL
Sbjct: 10  SIMRHILVMSSTAAIGISALFVVDLIDIFFLSLLGEQELAAAVGYAGTISFFTTSIGIGL 69

Query: 68  GIATTAVISRAIGAGKTEYAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGAPETVF 127
            IA  A++SRA+GA + E AK+L     V+  +  +++A+++      LL L+GA     
Sbjct: 70  SIALGALVSRAVGAKEFELAKRLLLNSAVVTVLVASVVAIIVTCFIPELLTLVGATGRTG 129

Query: 128 AIIDHYWLWWLASAWTGAMLYFYYSVCRANGNTLLPGTLMMVTSVLNLILDPIFIFTFDL 187
            +   Y    + S     +     +  RA G+  L     +    +NL+ DPIFIF   +
Sbjct: 130 ELAAGYLYILVPSMPIICLAMALGAALRAVGDAKLSMVSTLTGGGVNLVFDPIFIFLLAM 189

Query: 188 GIDGAAIATIIAFGVGIAIVAPKVAQRQWTSYQWQDLNISQSLTALGHIMGPAMLSQLLP 247
           GI+GAA+A+++A    + + A  V  +     ++      + +  +  I GPAM++ +  
Sbjct: 190 GIEGAALASVLARLAVLLVAARGVVVKHKLFGRFDLTAFKEDIKPIFAIAGPAMMTNIAT 249

Query: 248 PLSSMFATKLLASFGTAAVAAWALGSRFEFFALVAVLAMTMSLPPMIGRMLGAKEITHIR 307
           P+ +   T+ +A FG + VAAWA+  R    A   + A++ ++ P++G+  GA+E   +R
Sbjct: 250 PIGNAVVTRAIAEFGDSYVAAWAVLGRLTPVAFGMIFALSGAIGPIVGQNFGAREFARVR 309

Query: 308 QLVRIACQFVLGFQLLIALVTYVFATPLAELMTSETEVSQILNLHLVIVPISLGALGICM 367
           Q +  A QF   + + ++L+  +    +  L   + E ++++      + +     G   
Sbjct: 310 QSLTKALQFCALYVVTVSLLLMLLQEQIVALFAMQGESAELIRFFCRYIAVFFVFSGALF 369

Query: 368 LMVSVANALGKSYVALTISALRLFAFYLPCLWLGAHFYGIEGLFIGALVGNIIAG 422
           +  +  N LGK+  +   +  +     +P ++ G    G+EG+ IG ++G I+ G
Sbjct: 370 VANASFNNLGKAKYSTLFNVGKATLGTIPFVYYGGQLGGVEGVLIGQVLGAILFG 424