Pairwise Alignments

Query, 444 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., MATE efflux family protein (RefSeq) from Shewanella loihica PV-4

 Score =  221 bits (563), Expect = 4e-62
 Identities = 138/424 (32%), Positives = 229/424 (54%), Gaps = 6/424 (1%)

Query: 10  LAKQLFQMTWPMLFGVLSLMSFQLVDSAFIGQLGVLPLAAQGFTMPIQMVIIGIQVGLGI 69
           + + L  M+ P L G+L+++ F LVD+ FI QLG   LAA  FT P+ +++  I +G+G 
Sbjct: 12  IGRVLLNMSLPNLIGILTILGFSLVDTFFISQLGTEALAAISFTFPVTLIVSSIAIGIGA 71

Query: 70  ATTAVISRAIGAGKTEYAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGAPETVFAI 129
             +  + R IG+G +  AK      ++I    +A ++L+  L   PL  LLGA +    +
Sbjct: 72  GVSTNLGRLIGSGNSPKAKVFLHDALLITFWLIAALSLLGSLFIGPLFTLLGANDDSLPL 131

Query: 130 IDHYWLWWLASAWTGAMLYFYYSVCRANGNTLLPGTLMMVTSVLNLILDPIFIFTFD--- 186
           I  Y   W   A    +L       RA G+T  P  +M + +V+NL+LDP+ IF      
Sbjct: 132 IRDYMFLWYLGAPLLVLLMVGNQGLRATGDTKSPAKIMALAAVINLVLDPLLIFGLGPFP 191

Query: 187 -LGIDGAAIATIIAFGVGIAIVAPK-VAQRQWTSYQWQDLN-ISQSLTALGHIMGPAMLS 243
            L I GAAIAT+I++ V +++     + +R    +   +L  I  +   L HI  PA L 
Sbjct: 192 RLEIQGAAIATLISWVVALSLSGYLLIIKRNLVDFAEFNLERIHCNWRQLAHIAQPAALM 251

Query: 244 QLLPPLSSMFATKLLASFGTAAVAAWALGSRFEFFALVAVLAMTMSLPPMIGRMLGAKEI 303
            LL P+++     +LA    +AVAA+  G+R E   L+AV+A++ SL P I + LGA + 
Sbjct: 252 NLLNPVANAIIMAMLARIDHSAVAAFGAGTRLESVLLIAVMALSSSLVPFIAQNLGAGQT 311

Query: 304 THIRQLVRIACQFVLGFQLLIALVTYVFATPLAELMTSETEVSQILNLHLVIVPISLGAL 363
              R  + ++ +FVL FQ LI L   + ATP+A+L + + +V + L+ +++ +P + G L
Sbjct: 312 ERARDALMLSLRFVLVFQTLIYLPLALMATPIAQLFSKDPQVIEWLSFYIIALPAAYGPL 371

Query: 364 GICMLMVSVANALGKSYVALTISALRLFAFYLPCLWLGAHFYGIEGLFIGALVGNIIAGW 423
           G+ +L  +  NA  +   +L ++  RLF   LP   LG++  G++GL +   + N + G 
Sbjct: 372 GMVILTATSLNAYHRPMSSLVLNVCRLFLLLLPLAALGSYLGGVKGLLLALPITNAVMGI 431

Query: 424 AAWL 427
           A ++
Sbjct: 432 ACYI 435