Pairwise Alignments

Query, 444 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., DNA-damage-inducible protein F (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 70.5 bits (171), Expect = 1e-16
 Identities = 91/367 (24%), Positives = 158/367 (43%), Gaps = 31/367 (8%)

Query: 12  KQLFQMTWPMLFGVLSLMSFQLVDSAFIGQLG-VLPLAAQGFTMPIQMVIIGIQVGLGIA 70
           +QLF +  PM+   +++    LVD+A IG L     L        I  +II +   L +A
Sbjct: 19  RQLFALALPMILSNITVPLLGLVDTAVIGHLSDAYYLGGVALGSTIITLIIWLLGFLRMA 78

Query: 71  TTAVISRAIGAGKTE-YAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGAPETVFAI 129
           TT ++++A GA       K L    ++  G+G+A+I     LL+ PLL L  +       
Sbjct: 79  TTGLVAQAYGANDINAQLKLLVQGAMLATGLGIAMI-----LLQVPLLSLALSFSEASVE 133

Query: 130 IDHYWL-WWLASAWTGAMLYFYYSVCRANGNTLLPGTLM---MVTSVLNLILDPIFIFTF 185
           ++ Y   ++    W+         +         P   M   +  +V N+ILD +F+  F
Sbjct: 134 VERYCREYFQIRIWSTPFALLNLVMLGWLLGRQQPKAAMWQLIFANVANIILDVLFVLGF 193

Query: 186 DLGIDGAAIAT----IIAFGVGIAIVAPKVAQRQWTSYQWQDLNISQSLTALGHIM---G 238
             G+ GAA+A+    I AF V + +V  +V  +   +Y + ++      T  G ++    
Sbjct: 194 GWGVKGAALASVFADITAFSVALYMVLQQV--KLIPNYPFAEIRAHIRFTGFGQLLRLNS 251

Query: 239 PAMLSQLLPPLSSMFATKLLASFGTAAVAAWALGSRFEFFALVAVLAMTMSLPPMIGRML 298
              +  L    +  F T   A  G   VAA A+          A+  +       +G+  
Sbjct: 252 DIFIRSLCLQTAFAFMTFHGAGLGDNTVAANAVLLNLLLLISYALDGIAYYAEAEVGKAY 311

Query: 299 GAKEITHIRQLVRIACQF----VLGFQLLIALVTYVFATPLAELMTSETEV---SQILNL 351
           G K    + + V +A  +     LGF L+ +L    + + + EL+TS  EV   +QI  +
Sbjct: 312 GQKRAQQLHEAVVLAWCWSAITALGFTLIFSL----WGSHIIELLTSIDEVRTTAQIYLI 367

Query: 352 HLVIVPI 358
            LV++P+
Sbjct: 368 WLVLLPL 374