Pairwise Alignments

Query, 444 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 501 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  148 bits (373), Expect = 4e-40
 Identities = 106/424 (25%), Positives = 202/424 (47%), Gaps = 2/424 (0%)

Query: 9   SLAKQLFQMTWPMLFGVLSLMSFQLVDSAFIGQLGVLPLAAQ-GFTMPIQMVIIGIQVGL 67
           S+ + +  M+     G+ +L    L+D  F+  LG   LAA  G+   I      I +GL
Sbjct: 10  SILRHILVMSSTAAVGISALFVVDLLDIFFLSLLGEHELAAAVGYAGSISFFTTLIGIGL 69

Query: 68  GIATTAVISRAIGAGKTEYAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGAPETVF 127
            IA  A++SR+IGA   E AK+L     V+  +    +++V+      L+ L+GA     
Sbjct: 70  SIALGALVSRSIGAKDVELAKRLLLNSAVVTTLISVFVSIVVTTFIPELVTLVGASGHTA 129

Query: 128 AIIDHYWLWWLASAWTGAMLYFYYSVCRANGNTLLPGTLMMVTSVLNLILDPIFIFTFDL 187
            + + Y    + S     +        R+ G+  L     +    +N +LDPIFIF F +
Sbjct: 130 ELAESYLYILVPSLPFICLAMALGGALRSVGDAKLSMMSTLAGGGVNAVLDPIFIFLFAM 189

Query: 188 GIDGAAIATIIAFGVGIAIVAPKVAQRQWTSYQWQDLNISQSLTALGHIMGPAMLSQLLP 247
           GI+GAA+A+++A      I    V  +     ++   +    L  +  I GPA+L+ +  
Sbjct: 190 GIEGAALASVLARITVFVIAGRGVMVKHQLLGKFNRSDFKADLKPIFAIAGPAILTNIAT 249

Query: 248 PLSSMFATKLLASFGTAAVAAWALGSRFEFFALVAVLAMTMSLPPMIGRMLGAKEITHIR 307
           P+ + F T+ +A FG A VA WA+  R        + A++ ++ P++G+  GA     +R
Sbjct: 250 PIGNAFVTRAIADFGDAYVAGWAVLGRLVPVTFGMIFALSGAIGPIVGQNFGAGRFDRVR 309

Query: 308 QLVRIACQFVLGFQLLIALVTYVFATPLAELMTSETEVSQILNLHLVIVPISLGALGICM 367
           + +  A QF   + ++++L+ ++  + +  L   + + + ++      + +     GI  
Sbjct: 310 ESLTKAIQFCTLYVVVMSLLLFLLKSQIVSLFDMKGDSAALIEFFCSYIAVFFIFSGILF 369

Query: 368 LMVSVANALGKSYVALTISALRLFAFYLPCLWLGAHFYGIEGLFIGALVGNIIAG-WAAW 426
           +  +  N LGK+  +   +  +     +P +++GA   G+ G+ IG ++G+I+ G    W
Sbjct: 370 VANASFNNLGKAKYSTLFNVGKATLGTVPFVYVGAQLGGVYGVLIGQVIGSILFGVVGVW 429

Query: 427 LAYQ 430
           +AY+
Sbjct: 430 VAYR 433