Pairwise Alignments

Query, 444 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 81.6 bits (200), Expect = 5e-20
 Identities = 73/313 (23%), Positives = 135/313 (43%), Gaps = 4/313 (1%)

Query: 10  LAKQLFQMTWPMLFGVLSLMSFQLVDSAFIGQ-LGVLPLAAQGFTMPIQMVIIGIQVGLG 68
           +AK  ++ T P +  +L    +  +D  F+G  LG   LA      P+  ++  I   +G
Sbjct: 18  IAKLFWRYTIPTIASMLVTGVYVTIDGIFVGHYLGETGLAGMMLAYPVGAILYAIGAMIG 77

Query: 69  IATTAVISRAIGAGKTEYAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGAPETVFA 128
           + + A++S  +G G    A++L G    +  +  A  ALV  +  + +L  LGA   +  
Sbjct: 78  MGSAALVSINLGQGNVAKARKLLGNAFSLCLLAGAFFALVGGVFSRDILIALGAEGEILE 137

Query: 129 IIDHYWLWWLASAWTGAMLYFYYSVCRANGNTLLPGTLMMVTSVLNLILDPIFIFTFDLG 188
             + Y  W+ A      +   + ++ R +G   +   ++++  VLN  LD +FI  F  G
Sbjct: 138 NANEYLFWYFALCHFPIISMAFTTLLRNDGRPSMVTFVLILGGVLNTFLDWLFIVVFPFG 197

Query: 189 IDGAAIATIIAFGV-GIAIVAPKVAQRQWTSYQWQDLNIS-QSLTALGHIMGPAMLSQL- 245
           + GAAIAT+++  V G+  +      R       + + +   +   +  +  P+ L  L 
Sbjct: 198 LAGAAIATMLSQAVTGLLCLQHFFGARTQLKINLEQMKLKLDNCINIARVGLPSFLMNLY 257

Query: 246 LPPLSSMFATKLLASFGTAAVAAWALGSRFEFFALVAVLAMTMSLPPMIGRMLGAKEITH 305
           L  + ++  T  L   G   VAA+ + S  E F  +    + +   P+     GA     
Sbjct: 258 LSIVLTLHNTAFLWVGGPLHVAAYGVVSYTEAFFYLIFEGIALGTQPIYSFNAGAGRFDR 317

Query: 306 IRQLVRIACQFVL 318
           ++Q   IA    L
Sbjct: 318 VKQARNIAFSMTL 330