Pairwise Alignments

Query, 444 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  221 bits (563), Expect = 4e-62
 Identities = 134/435 (30%), Positives = 233/435 (53%), Gaps = 14/435 (3%)

Query: 7   TSSLAKQLFQMTWPMLFGVLSLMSFQLVDSAFIGQLGVLPLAAQGFTMPIQMVIIGIQVG 66
           ++ + + L  M+ P L G+++++ F L D+ FI QLG   LAA  FT P+ ++I  I +G
Sbjct: 9   SAPIGRVLLNMSLPNLIGIMTILGFSLADTFFISQLGTEALAAISFTFPVTLIISSIAIG 68

Query: 67  LGIATTAVISRAIGAGKTEYAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGAPETV 126
           +G   +  + R IG+G    AK      +++  I +A ++ +  +  +PL  LLGA ET 
Sbjct: 69  VGAGVSTNLGRLIGSGNAPQAKVFLHDALLLTFILIASLSALGSIFIEPLFSLLGANETS 128

Query: 127 FAIIDHYWLWWLASAWTGAMLYFYYSVCRANGNTLLPGTLMMVTSVLNLILDPIFIFTFD 186
             +I  Y ++W   A    +L       R+ G+T  P  +M + +++NLILDP+ IF   
Sbjct: 129 LPLIHDYMMYWYVGAPLLVLLMVGNQGLRSTGDTRSPAMIMTLAAIINLILDPLLIFGIG 188

Query: 187 ----LGIDGAAIATIIAFGVGIA------IVAPKVAQRQWTSYQWQDLNISQSLTALGHI 236
               L I GAAIAT+ ++ V ++      I+  ++ +R          N S+    L HI
Sbjct: 189 PFPRLEIQGAAIATLFSWLVALSLSGYLLIIKHRMLERAAFDIDRMRANWSK----LAHI 244

Query: 237 MGPAMLSQLLPPLSSMFATKLLASFGTAAVAAWALGSRFEFFALVAVLAMTMSLPPMIGR 296
             PA L  L+ PL++     +LA    +AVAA+  G+R E   L+ V+A++ SL P I +
Sbjct: 245 AQPAALMNLINPLANAVIMAMLAHIDHSAVAAFGAGTRLESVLLIVVMALSSSLMPFIAQ 304

Query: 297 MLGAKEITHIRQLVRIACQFVLGFQLLIALVTYVFATPLAELMTSETEVSQILNLHLVIV 356
            LGA +    +Q + ++ +F+L FQ L+ +    FA PLA L +++ +V + L+ +++++
Sbjct: 305 NLGAGQPQRAKQALLLSLKFILVFQTLLYIPLAFFAQPLASLFSTDPQVLEWLSFYILVL 364

Query: 357 PISLGALGICMLMVSVANALGKSYVALTISALRLFAFYLPCLWLGAHFYGIEGLFIGALV 416
           P + G LGI ++  +  NA  +   +L I+  RL    LP   LG++  G++GL +   +
Sbjct: 365 PCAYGPLGIVIIFATALNAYHRPMSSLVINLCRLVLLMLPLAALGSYIDGVKGLLLALPI 424

Query: 417 GNIIAGWAAWLAYQK 431
            N++ G A +   Q+
Sbjct: 425 TNLLMGIACYYLAQR 439