Pairwise Alignments

Query, 444 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., putative transmembrane cation efflux protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 72.8 bits (177), Expect = 2e-17
 Identities = 84/414 (20%), Positives = 171/414 (41%), Gaps = 16/414 (3%)

Query: 20  PMLFGVLSLMSFQLVDSAFIGQ-LGVLPLAAQGFTMPIQMVIIGIQVGLGIATTAVISRA 78
           P + G++    F + D  F+G+ +G   LAA   T P+ M+  GI +  G+  + V S  
Sbjct: 22  PTVLGMVFSAIFVITDGIFVGKGIGSDALAAVNITAPLFMIATGIGLMFGVGGSVVASIY 81

Query: 79  IGAGKTEYAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGAPETVFAIIDHYWLWWL 138
           +  GK + A       +V     V +++ + +    PL  LLG+ + +  ++  Y +W+L
Sbjct: 82  LSQGKRKAANINITQALVFSTFIVLVMSALCFCFVGPLGCLLGSSDRLLPLVIEYMIWYL 141

Query: 139 ASAWTGAMLYFYYSVCRANGNTLLPGTLMMVTSVLNLILDPIFIFTFDLGIDGAAIATII 198
                  +L       R +G+         + ++ N+I D IFIF F  G+ GAA AT +
Sbjct: 142 PFLVFYELLSTGMFFIRLDGSPNYAMMCNAIAAIFNIIFDYIFIFEFGWGMMGAAFATSL 201

Query: 199 AFGVGIAIVAPKVAQRQWTSYQWQDLNISQSLTALGHIMGPAML---SQLLPPLSSMFAT 255
              VG  ++      R   +     + +S     L    G  M+   +      +S+   
Sbjct: 202 GTVVG-GLMTVIYLTRFSRNIHLHRIKLSLKSLMLTLRNGGYMIKLGTSAFISEASIACM 260

Query: 256 KLLASF------GTAAVAAWALGSRFEFFALVAVLAMTMSLPPMIGRMLGAKEITHIRQL 309
             L ++      G   VAA+++   F     +   A+  S  P+I    GA +   +R+ 
Sbjct: 261 MFLGNYVFIHHLGEDGVAAFSIACYFFPIIFMVYNAIAQSAQPIISYNFGAGQPDRVRKA 320

Query: 310 VRIACQFVLGFQLLIALVTYVFATPLAELMTSETEVSQILNLHLVIVP-ISLGALGICML 368
           + +A +  L   +   ++T++    +  L    +      ++ +  +P   +G +     
Sbjct: 321 LHLAIRTALICGISFFIITFLCRQNIVSLFIDRS--CPAFDIAVNGIPYFGVGFIFFAAN 378

Query: 369 MVSVA--NALGKSYVALTISALRLFAFYLPCLWLGAHFYGIEGLFIGALVGNII 420
           M+ +    ++ +   A  I+ LR   F L   ++     G+ G+++   +  ++
Sbjct: 379 MIGIGYYQSIRRGQRATIITLLRGVVFMLIGFFVLPLVLGVPGIWLAVSLAELL 432



 Score = 25.0 bits (53), Expect = 0.005
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 13/60 (21%)

Query: 161 LLPGTLMMVTSVLNLILDPIFIFTFDLGIDGAAIATIIA------------FGVGIAIVA 208
           L+P  L MV S + +I D IF+    +G D  A   I A            FGVG ++VA
Sbjct: 20  LVPTVLGMVFSAIFVITDGIFVGK-GIGSDALAAVNITAPLFMIATGIGLMFGVGGSVVA 78