Pairwise Alignments

Query, 444 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., MATE efflux family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  222 bits (565), Expect = 2e-62
 Identities = 136/446 (30%), Positives = 238/446 (53%), Gaps = 13/446 (2%)

Query: 7   TSSLAKQLFQMTWPMLFGVLSLMSFQLVDSAFIGQLGVLPLAAQGFTMPIQMVIIGIQVG 66
           ++ + + L  M+ P L G+++++ F L D+ FI QLG   LAA  FT P+ ++I  I +G
Sbjct: 9   SAPIGRVLLNMSLPNLIGIMTILGFSLADTFFISQLGTEALAAISFTFPVTLIISSIAIG 68

Query: 67  LGIATTAVISRAIGAGKTEYAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGAPETV 126
           +G   +  + R IG+G    AK      +++  I +A ++ +  +  +PL  LLGA +T 
Sbjct: 69  IGAGVSTNLGRLIGSGNAPRAKVFLHDALLLTFILIASLSALGSIFIKPLFSLLGANDTS 128

Query: 127 FAIIDHYWLWWLASAWTGAMLYFYYSVCRANGNTLLPGTLMMVTSVLNLILDPIFIFTFD 186
             +I  Y ++W   A    +L       R+ G+T  P  +M + +++NLILDP+ IF   
Sbjct: 129 LPLIHDYMMYWYVGAPLLVLLMVGNQGLRSTGDTRSPAMIMALAAIINLILDPLLIFGIG 188

Query: 187 ----LGIDGAAIATIIAFGVGIAI----VAPKVAQRQWTSYQWQDLNISQSLTALGHIMG 238
               L I GAAIAT+ ++ + +++    +  K    +W ++    +  + S   L HI  
Sbjct: 189 PFPRLEIQGAAIATLFSWLIALSLSGYLLIIKRNMLEWAAFDIDRMRANWS--KLAHIAQ 246

Query: 239 PAMLSQLLPPLSSMFATKLLASFGTAAVAAWALGSRFEFFALVAVLAMTMSLPPMIGRML 298
           PA L  L+ PL++     +LA    +AVAA+  G+R E   L+ V+A++ SL P I + L
Sbjct: 247 PAALMNLINPLANAVIMAMLAHIDHSAVAAFGAGTRLESVLLIVVMALSSSLMPFIAQNL 306

Query: 299 GAKEITHIRQLVRIACQFVLGFQLLIALVTYVFATPLAELMTSETEVSQILNLHLVIVPI 358
           GA +    +Q + ++ +F+  FQ L+ +    FA PLA L +++ +V + L+ +++++P 
Sbjct: 307 GAGQTQRAKQALLLSLKFIFVFQTLLYIPLAFFAQPLAHLFSTDPQVLEWLSFYILVLPC 366

Query: 359 SLGALGICMLMVSVANALGKSYVALTISALRLFAFYLPCLWLGAHFYGIEGLFIGALVGN 418
           + G LGI ++  +  NA  +   +L I+  RL    LP   LG++  G++GL +   + N
Sbjct: 367 AYGPLGIVIIFATALNAYHRPMSSLVINLCRLVLLMLPLAALGSYIDGVKGLLLALPITN 426

Query: 419 IIAGWAAWLAYQKALRQLEGAHHTSA 444
           ++ G A    Y  A R  E A  T+A
Sbjct: 427 LLMGIA---CYYLAQRICEPAKVTTA 449