Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  216 bits (549), Expect = 2e-60
 Identities = 123/336 (36%), Positives = 202/336 (60%)

Query: 180 LVLTILMAYQFTRRLETLSQEARKVFDNPLMELVYNGRVDDLSEIQLAMKMRQSELNAVV 239
           +VL +L+       L    + AR +    L++++ +   D+   +  A+   Q  L   +
Sbjct: 204 VVLALLLTRSIVAPLNRALEAARTIASGNLVQVIADDGKDEPGRLLQALATMQVSLRQTI 263

Query: 240 GRIQDSSIQIGEAAKMSSQNSATTADNLDAQTRETEQLATAITQMNITATEIAHNAQAAS 299
            +I  S+ Q+G AA+  S  +  ++  L  Q  E EQ ATA+ +M     E+A NA + S
Sbjct: 264 EQIAGSATQLGAAAQELSAVTQESSRGLQQQHNEIEQAATAVNEMTAAVEEVARNAVSTS 323

Query: 300 DATVHAKNAARDGMHAVEQTVDAIGEMASQMKTASSVIEQLSSQSAMIGQVMEVIQSIAE 359
           +A+  +  AA++G   V +TVDAI  M   ++  +S+IE L+ Q   IG+V++VI++IAE
Sbjct: 324 EASNQSTQAAQEGRTRVVETVDAIQTMTHDVQATASMIEGLAVQGRDIGKVLDVIRAIAE 383

Query: 360 QTNLLALNAAIEAARAGDQGRGFAVVADEVRKLAQRSTESTKEIQEVITSIQTSTRNAVE 419
           QTNLLALNAAIEAARAG+ GRGFAVVADEVR LA R+ +ST+EI++++  IQ  T  AV+
Sbjct: 384 QTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTAQSTQEIEKMVAGIQNGTGQAVQ 443

Query: 420 TIEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMANVTEDMNRSVQS 479
           +++Q N+ + S ++ A  +G  L  +   +  I  RN  IA+A EE A V+ +++R++ +
Sbjct: 444 SMQQSNQRTQSTLEMARAAGVALEQITQSIHQINERNLVIASASEEQAQVSREVDRNLVN 503

Query: 480 ISDVSTETLGLAENTQNECRQLAHNLAQQTSLVAQF 515
           I D++T++   A+ T +   +L+       ++VA+F
Sbjct: 504 IRDLATQSASGAKQTSDATHELSRLAVGLNAMVARF 539



 Score = 33.9 bits (76), Expect = 2e-05
 Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 12/174 (6%)

Query: 349 QVMEVIQSIAEQTN-LLALNAAIEAARAGDQGRGFAVVADEVRKLAQRSTESTKEIQEVI 407
           ++ E    + EQ N L+A+N A  +  +   G  +      +  ++  +  +T  +  ++
Sbjct: 151 RIKEGTDLMGEQLNKLIAINVAGASESSAKAGEHYDSAITGIIIVSISAALATVVLALLL 210

Query: 408 T-SIQTSTRNAVE---TIEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQIATAI 463
           T SI      A+E   TI  GN + V   D     G  L AL +    +++R       I
Sbjct: 211 TRSIVAPLNRALEAARTIASGNLVQVIADDGKDEPGRLLQALATM--QVSLRQ-----TI 263

Query: 464 EEMANVTEDMNRSVQSISDVSTETLGLAENTQNECRQLAHNLAQQTSLVAQFRR 517
           E++A     +  + Q +S V+ E+    +   NE  Q A  + + T+ V +  R
Sbjct: 264 EQIAGSATQLGAAAQELSAVTQESSRGLQQQHNEIEQAATAVNEMTAAVEEVAR 317