Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., Aerotaxis receptor Aer from Pseudomonas fluorescens FW300-N2E2

 Score =  358 bits (920), Expect = e-103
 Identities = 201/525 (38%), Positives = 314/525 (59%), Gaps = 12/525 (2%)

Query: 1   MRNNQPVTQKEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPD 60
           MRNNQPVTQ+E T+P    L+STT     I Y +  F D++GY+ +EL+  PHN+VRHPD
Sbjct: 1   MRNNQPVTQRERTFPAQQRLISTTDAKGVITYCNDAFVDISGYSKEELIRSPHNLVRHPD 60

Query: 61  MPPEAFKDMWEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSR 120
           +P   F  MW  LK G  WMG+VKNR KNGDHYWV+A+ +P+ E  +VV Y+SVR+ PS 
Sbjct: 61  VPSAVFAHMWGTLKQGLPWMGIVKNRSKNGDHYWVNAYVTPVFEGNQVVGYESVRVKPSA 120

Query: 121 QHVDNADKLYKEIKAGKTPWQLKMPRTRLWQRL---GLGFIVAAGVSFAADRFFAGA-GL 176
           + +  A+ LY+ I  GK+     +P +  W  +    L FI+ + +SF    F   + G 
Sbjct: 121 EQIARAEALYQRINQGKSA----VPGSDKWVPMLQDWLPFILVSQLSFVVGAFLDSSWGF 176

Query: 177 PLMLVLTI---LMAYQFTRR-LETLSQEARKVFDNPLMELVYNGRVDDLSEIQLAMKMRQ 232
            L  VL++   LM  Q+ +R ++ L + A +   +PL+  +Y       + +++++  ++
Sbjct: 177 ALAAVLSVPLGLMGLQWQQRGIKRLLRLAEQTTSDPLIARMYTDSRGVQARLEMSILSQE 236

Query: 233 SELNAVVGRIQDSSIQIGEAAKMSSQNSATTADNLDAQTRETEQLATAITQMNITATEIA 292
           + L   + R+QD++  + + A+ S+  +  ++  L+ Q  ETEQ+ATA+ QM  T  E+A
Sbjct: 237 ARLKTCLTRLQDTAEHLNDQARQSNTLAHNSSSGLERQRVETEQVATAVNQMAATTQEVA 296

Query: 293 HNAQAASDATVHAKNAARDGMHAVEQTVDAIGEMASQMKTASSVIEQLSSQSAMIGQVME 352
            + Q  +DAT  A      G     +T +AI  ++  +      + QL+  S  IG V++
Sbjct: 297 SHVQRTADATQEANRLTSRGRDIAGETREAIERLSVVVGETGQTVTQLAKDSDEIGGVVD 356

Query: 353 VIQSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRKLAQRSTESTKEIQEVITSIQT 412
           VI+ IA+QTNLLALNAAIEAARAG+ GRGFAVVADEVR+LAQR++EST +I  +I  +Q 
Sbjct: 357 VIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTSESTGQIHALIAKLQQ 416

Query: 413 STRNAVETIEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMANVTED 472
           +  NAV+T++ G++ +   V     + + L  +   V+ IT    QIA A EE ++V E+
Sbjct: 417 TATNAVQTMDAGHRQAEEGVARVMEADEALVGISEAVAHITDMTTQIAAATEEQSSVAEE 476

Query: 473 MNRSVQSISDVSTETLGLAENTQNECRQLAHNLAQQTSLVAQFRR 517
           ++R++ +IS+++ +T G A ++     +L      Q SLV +F R
Sbjct: 477 ISRNISNISELADQTSGQAHSSALLSEELTRTANTQYSLVERFNR 521